View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_low_5 (Length: 539)
Name: NF5355_low_5
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_low_5 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 269 - 539
Target Start/End: Original strand, 2517584 - 2517854
Alignment:
| Q |
269 |
gatgggaaaattatataaaagcaatgaactttcagttcctaataagtacatgactcattcaatattggttcttttccaaaccaaagcaggctgaacaaaa |
368 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517584 |
gatgggaagattatataaaagcaatgaactttcagttcctaataagtacatgactcattcaatattggttcttttccaaaccaaagcaggctgaacaaaa |
2517683 |
T |
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| Q |
369 |
gaagaaaacggaaaaagaatgtaggaccaaacagccagcagatactaaacaaagaaaggagtcatttagcacatgaaaacatcataacttaaggccttga |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517684 |
gaagaaaacggaaaaagaatgtaggaccaaacagccagcagatactaaacaaagaaaggagtcatttagcacatgaaaacatcataacttaaggccttga |
2517783 |
T |
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| Q |
469 |
tatcatactcacatcaagtgcattcttgactacaaaatcaacgtaataaattgaaattgttgaatacatac |
539 |
Q |
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| T |
2517784 |
tatcatactcacatcaagtgcattcttgactacaaaatcaacgtaataaattgaaattgttgaatacatac |
2517854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 2517331 - 2517474
Alignment:
| Q |
16 |
atagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgagacaaaaacattctctccttttttcggagagcctact |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2517331 |
atagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgaaacaaaaacattctctccttttttcggagagcctact |
2517430 |
T |
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| Q |
116 |
tcaaagaaaccagcataagcggtcattcctggcatacctgtgct |
159 |
Q |
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| T |
2517431 |
tcaaagaaaccagcataagcggtcattcctggcatacctgtgct |
2517474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 1459112 - 1458972
Alignment:
| Q |
16 |
atagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgagacaaaaacattctctccttttttcggagagcctact |
115 |
Q |
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| T |
1459112 |
atagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttaggagagcctact |
1459013 |
T |
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| Q |
116 |
tcaaagaaaccagcataagcggtcattcctggcatacctgt |
156 |
Q |
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| T |
1459012 |
tcaaagaaaccagcataagcagtcattccaggcatacctgt |
1458972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 2428819 - 2428679
Alignment:
| Q |
16 |
atagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgagacaaaaacattctctccttttttcggagagcctact |
115 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||| |
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| T |
2428819 |
atagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttaggagagcctact |
2428720 |
T |
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| Q |
116 |
tcaaagaaaccagcataagcggtcattcctggcatacctgt |
156 |
Q |
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| T |
2428719 |
tcaaagaaaccagcataagcagtcattccaggcatacctgt |
2428679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 2512971 - 2513111
Alignment:
| Q |
16 |
atagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgagacaaaaacattctctccttttttcggagagcctact |
115 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| || |||||||||||| |
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| T |
2512971 |
atagcaaccatgcaatttagcgaattggccaacaagttgaccaactgctccagaggcagctgaaacaaaaacattctctcctttcttgggagagcctact |
2513070 |
T |
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| Q |
116 |
tcaaagaaaccagcataagcggtcattcctggcatacctgt |
156 |
Q |
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| T |
2513071 |
tcaaagaaaccagaataagcagtcattcctggcatacctgt |
2513111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 2506359 - 2506497
Alignment:
| Q |
17 |
tagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgagacaaaaacattctctccttttttcggagagcctactt |
116 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || | || |||||||| |
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| T |
2506359 |
tagcaaccatgcaatttagcgaattggccaacaagttgaccaactgcaccagaggcagctgaaacaaaaacattctctcctttcttggtagcgcctactt |
2506458 |
T |
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| Q |
117 |
caaagaaaccagcataagcggtcattcctggcatacctg |
155 |
Q |
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| T |
2506459 |
caaagaaaccagcataagcagtcattcctggcatacctg |
2506497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 2497646 - 2497772
Alignment:
| Q |
31 |
tttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgagacaaaaacattctctccttttttcggagagcctacttcaaagaaaccagca |
130 |
Q |
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|||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||||| |||||||||| || ||| ||||| |||||||||||||||| |
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| T |
2497646 |
tttagcgaattgaccaacaagttgaccgactgcaccagaggcagctgaaacaaaaacagtctctcctttcttaggactgcctagttcaaagaaaccagca |
2497745 |
T |
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| Q |
131 |
taagcggtcattcctggcatacctgtg |
157 |
Q |
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| T |
2497746 |
taagcagttattcctggcatacctgtg |
2497772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 2435182 - 2435046
Alignment:
| Q |
20 |
caaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgagacaaaaacattctctccttttttcggagagcctacttcaa |
119 |
Q |
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|||||||||| ||| |||||||| || |||||||||||||| ||||| || |||||||| ||| |||||||||||||||| || ||| ||||| ||||| |
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| T |
2435182 |
caaccatgcagttttgcaaattgacctacaagttgaccaacagcaccggatgcagctgaaacataaacattctctcctttcttaggactgcctaattcaa |
2435083 |
T |
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| Q |
120 |
agaaaccagcataagcggtcattcctggcatacctgt |
156 |
Q |
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||||||||||||| || |||||||| ||||||||||| |
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| T |
2435082 |
agaaaccagcatatgcagtcattcccggcatacctgt |
2435046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 2431792 - 2431656
Alignment:
| Q |
20 |
caaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgagacaaaaacattctctccttttttcggagagcctacttcaa |
119 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||| |||| || || ||||| ||| ||||||| |||||||| || ||| ||||| ||||| |
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| T |
2431792 |
caaccatgcaattttgcaaattggccaacaagttgaccaacagcactggatgccgctgaaacataaacattttctcctttcttaggactgcctaattcaa |
2431693 |
T |
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| Q |
120 |
agaaaccagcataagcggtcattcctggcatacctgt |
156 |
Q |
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|||||||| |||| || |||| ||| |||||||||| |
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| T |
2431692 |
agaaaccaacatatgcagtcaatcccagcatacctgt |
2431656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 946137 - 946231
Alignment:
| Q |
16 |
atagcaaccatgcaatttagcaaattgtccaacaagttgaccaactgcaccagaagcagctgagacaaaaacattctctccttttttcggagagc |
110 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||| || ||||| || || ||||| |||||||||| ||||| |||| ||||||| |
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| T |
946137 |
atagcaaccatgcaatttagcaagttgaccaacaagttgacccacagcacctgatgctgctgaaacaaaaacatattctccacttttgggagagc |
946231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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