View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5355_low_6 (Length: 402)

Name: NF5355_low_6
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5355_low_6
NF5355_low_6
[»] chr5 (5 HSPs)
chr5 (14-161)||(4890702-4890849)
chr5 (220-313)||(4890908-4891001)
chr5 (19-103)||(28822735-28822818)
chr5 (65-105)||(7462835-7462875)
chr5 (65-105)||(20501401-20501441)
[»] chr7 (2 HSPs)
chr7 (16-103)||(7836912-7836998)
chr7 (65-105)||(5073273-5073313)
[»] chr1 (5 HSPs)
chr1 (64-105)||(33843218-33843259)
chr1 (64-105)||(33950720-33950761)
chr1 (65-105)||(44579888-44579928)
chr1 (65-105)||(1247261-1247301)
chr1 (65-105)||(41620385-41620425)
[»] scaffold0121 (1 HSPs)
scaffold0121 (68-106)||(4288-4326)
[»] chr4 (2 HSPs)
chr4 (66-103)||(9972134-9972171)
chr4 (65-105)||(41621291-41621331)
[»] chr3 (3 HSPs)
chr3 (68-105)||(21356870-21356907)
chr3 (73-105)||(9219778-9219810)
chr3 (65-101)||(27837276-27837312)
[»] chr8 (1 HSPs)
chr8 (65-105)||(14342528-14342568)
[»] chr6 (1 HSPs)
chr6 (65-105)||(32388232-32388272)
[»] chr2 (3 HSPs)
chr2 (65-105)||(9330525-9330565)
chr2 (65-97)||(13242755-13242787)
chr2 (65-105)||(33549078-33549118)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 4890702 - 4890849
Alignment:
Q  14 agacaattaaatatggagaagtgagatatgttcggagttcgaatctcgaatctgcataaattatacaatatctctatcaactgagttaagctatatgcta 113  Q
    |||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||| |||| |||| ||||    
T  4890702 agacaattaaatattgaaaagtgagatatgttcggggttcgaatctcgaacctgcataaattatgcaatatttctatcaactgagctaagttatacgcta 4890801  T
Q  114 gatttgagtcttatttgtaaaattatgtcacatcttcattaattggat 161  Q
    || |||| ||||||| |||| |||||||||||||||||||||||||||    
T  4890802 gacttgaatcttattcgtaagattatgtcacatcttcattaattggat 4890849  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 220 - 313
Target Start/End: Original strand, 4890908 - 4891001
Alignment:
Q  220 gatcggatattgtgtagtgacagtgtgacactgccaatctgccatgccacgattcatttgtccaatggtctaaacaatttcccacgtgcaaatg 313  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4890908 gatcggatattgtgtagtgacagtgtgacacagccaatctgccatgccacgattcatttgtccaatggtctaaacaatttcccacgtgcaaatg 4891001  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 28822735 - 28822818
Alignment:
Q  19 attaaatatggagaagtgagatatgttcggagttcgaatctcgaa-tctgcataaattatacaatatctctatcaactgagttaag 103  Q
    |||||||||||||||||| | |  |||||| ||||||||| |||  ||||||||||||||||||| || ||| |||||||| ||||    
T  28822735 attaaatatggagaagtggggt--gttcggggttcgaatcccgatctctgcataaattatacaatgtccctaccaactgagataag 28822818  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 7462875 - 7462835
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    |||||||||||||||||| || ||||||||| |||||||||    
T  7462875 ctgcataaattatacaatgtccctatcaactaagttaagct 7462835  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 20501441 - 20501401
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    ||||||||||||| |||| |||||| |||||||||||||||    
T  20501441 ctgcataaattatgcaatgtctctaccaactgagttaagct 20501401  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 7836912 - 7836998
Alignment:
Q  16 acaattaaatatggagaagtgagatatgttcggagttcgaatctcgaatc-tgcataaattatacaatatctctatcaactgagttaag 103  Q
    |||||||||| ||||||||||   | ||||||||||||||| | |||  | ||||||||||||||||| || |||||||||||||||||    
T  7836912 acaattaaatgtggagaagtgg--tgtgttcggagttcgaaccccgatccctgcataaattatacaatgtccctatcaactgagttaag 7836998  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 5073313 - 5073273
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    ||||||| | ||||||||||||||| |||||||||||||||    
T  5073313 ctgcatataatatacaatatctctaccaactgagttaagct 5073273  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 33843218 - 33843259
Alignment:
Q  64 tctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  33843218 tctgcataaattatgcaatatctctatcaactgagctaagct 33843259  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 33950761 - 33950720
Alignment:
Q  64 tctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  33950761 tctgcataaattatgcaatatctctatcaactgagctaagct 33950720  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 44579928 - 44579888
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  44579928 ctgcataaattatacaatgtctctatcaactgagctaagct 44579888  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 1247301 - 1247261
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    ||||||||||||| |||||||  ||||||||||||||||||    
T  1247301 ctgcataaattatgcaatatccttatcaactgagttaagct 1247261  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 41620425 - 41620385
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    |||||||||||||||||| |  |||||||||||||||||||    
T  41620425 ctgcataaattatacaatgttcctatcaactgagttaagct 41620385  T

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Target: scaffold0121 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 4326 - 4288
Alignment:
Q  68 cataaattatacaatatctctatcaactgagttaagcta 106  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  4326 cataaattatacaatatctctaccaactgagttcagcta 4288  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 9972171 - 9972134
Alignment:
Q  66 tgcataaattatacaatatctctatcaactgagttaag 103  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  9972171 tgcatatattatacattatctctatcaactgagttaag 9972134  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 41621291 - 41621331
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    |||||||||||||||||||||||| |||| |||| ||||||    
T  41621291 ctgcataaattatacaatatctctgtcaattgagctaagct 41621331  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 21356907 - 21356870
Alignment:
Q  68 cataaattatacaatatctctatcaactgagttaagct 105  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  21356907 catatattatacaatatatctatcaactgagttaagct 21356870  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 9219810 - 9219778
Alignment:
Q  73 attatacaatatctctatcaactgagttaagct 105  Q
    |||||||||||||||||||||||||| ||||||    
T  9219810 attatacaatatctctatcaactgagctaagct 9219778  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 27837312 - 27837276
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagtta 101  Q
    |||||||||||||||||| |||||||||| |||||||    
T  27837312 ctgcataaattatacaatgtctctatcaattgagtta 27837276  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 14342528 - 14342568
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    ||||||||||||| |||| |||||| |||||||||||||||    
T  14342528 ctgcataaattatgcaatgtctctaccaactgagttaagct 14342568  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 32388272 - 32388232
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    ||||||||||||| |||| || |||||||||||||||||||    
T  32388272 ctgcataaattatgcaatgtccctatcaactgagttaagct 32388232  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 9330525 - 9330565
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    ||||||| | ||| |||||||||||||||||||||||||||    
T  9330525 ctgcatataatatgcaatatctctatcaactgagttaagct 9330565  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 13242755 - 13242787
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactga 97  Q
    ||||||||||||| |||||||||||||||||||    
T  13242755 ctgcataaattatgcaatatctctatcaactga 13242787  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 33549078 - 33549118
Alignment:
Q  65 ctgcataaattatacaatatctctatcaactgagttaagct 105  Q
    ||||||| | |||||||||||||||||||||||| ||||||    
T  33549078 ctgcatataatatacaatatctctatcaactgagctaagct 33549118  T

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