View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5355_low_8 (Length: 385)
Name: NF5355_low_8
Description: NF5355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5355_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 27755610 - 27755262
Alignment:
| Q |
20 |
gggagagggcggagacatggattttgagctggcggaaggtaagggagttgccggtttcggcgtcagcgagggcgattgtgtcggcgacagaggaagtaga |
119 |
Q |
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| T |
27755610 |
gggagagggcggaaacatggattttgagctggcggaaggtaagggagttgccggtttcggcgtcagcgagggcgatggtgtcggcgacagaggaagttga |
27755511 |
T |
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| Q |
120 |
ttggaagaggaaggaggttaaagagaggttgggatcggtgggaaggttaatgggttgtcttggtgatgaatacgtcattgttttgaggttgaagcagttt |
219 |
Q |
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| T |
27755510 |
ttggaagaggaaggaggttaaagagaggttgggatcggtgggaaggttaatgggttgtcttggtgatgaatacgtcattgttttgaggttgaagcagttt |
27755411 |
T |
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| Q |
220 |
tttgccattgttgctactttcttagcttggctgaggaagagaagtgttgacttagtttgtttgaattagcgccaaaaccaacgttgaatcccatgtatat |
319 |
Q |
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| T |
27755410 |
tttgacattgttgctactttcttagcttggctgaggtagagaagtgttgactcagtttgtttgaattagcgccaaaaccaacgttgaatcccatgtatat |
27755311 |
T |
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| Q |
320 |
gggtattgtacttggcaactagtgtcatgcttgattattttatttcaca |
368 |
Q |
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| T |
27755310 |
gggtattgtacttggcaacgagtgtcatgcttgattattttatttcaca |
27755262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 45 - 247
Target Start/End: Complemental strand, 27766245 - 27766043
Alignment:
| Q |
45 |
gagctggcggaaggtaagggagttgccggtttcggcgtcagcgagggcgattgtgtcggcgacagaggaagtagattggaagaggaaggaggttaaagag |
144 |
Q |
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| T |
27766245 |
gagctggcggaaggttaggaattcaccggtttgggcgtcggtaagggcgatggtgtcggcggcggaggaagtggattggaagaggaatgaagttagagaa |
27766146 |
T |
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| Q |
145 |
aggttgggatcggtgggaaggttaatgggttgtcttggtgatgaatacgtcattgttttgaggttgaagcagttttttgccattgttgctactttcttag |
244 |
Q |
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| T |
27766145 |
aggttctgatcagtgggaaggttgatggattgtcttggtgaggaatacgtcatcgttttgaggttgaagcagtttttcgccattgttgctactttcttag |
27766046 |
T |
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| Q |
245 |
ctt |
247 |
Q |
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||| |
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| T |
27766045 |
ctt |
27766043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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