View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5356-Insertion-1 (Length: 960)
Name: NF5356-Insertion-1
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5356-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 99 - 523
Target Start/End: Complemental strand, 40893651 - 40893227
Alignment:
| Q |
99 |
tcaacacaatccaaactagtgatgaaaagttactaataaattgaacaaatgaaatcaatccgaaagaacagcataataataccactgccactgaggatat |
198 |
Q |
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| T |
40893651 |
tcaacacaatccaaactagtgatgaaaagttactaataaattgaacaaatgaaatcaatccgaaagaacagcataataataccactgccactgaggatat |
40893552 |
T |
|
| Q |
199 |
gttcgagtttccgtttcaactttctcagactcggattcgccattgatattgaaccaatatgttgcttctcacaaaacatgcaataatcagaatgaaggtt |
298 |
Q |
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| T |
40893551 |
gtttgagtttccgtttcaactttctcaaactcggattcgccattgatattgaaccaatatgttgcttctcacaaaacgtgcaataatcagaatgaaggtt |
40893452 |
T |
|
| Q |
299 |
gtgagttcgtataatactgcagcacatgaattctaggacttggttgtgaactgaaatgtcccaaaccctgccatcaattgtacttgttttgactatatgg |
398 |
Q |
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| T |
40893451 |
gttagttcgtataatactgcagcacatgaattctaggacttggttgtgaactgaaatgtcccaaaccctgccatcaattgtacttgttttgactatatgg |
40893352 |
T |
|
| Q |
399 |
ctctaatgaaagtcttgttttgtttatttaatgatgattgctttacaacatgtttacgatatcatggtgcatatttctaagaaattaccggcaagcaaag |
498 |
Q |
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| T |
40893351 |
ctctaatgaaagtcttgttttgtttatttaatgattattgctttacaacatgtttacgatatcatggtgcatatttctaagaaattaccggcaagcaaag |
40893252 |
T |
|
| Q |
499 |
gtgttattatgccagagtgcatatg |
523 |
Q |
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| T |
40893251 |
gtgttattatgccagagtgcatatg |
40893227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 570 - 920
Target Start/End: Complemental strand, 40893180 - 40892830
Alignment:
| Q |
570 |
actaaacaataggatctagattacgttccttttttgaagaggtacactaccaccaccttactcttgtatttaggtgtgtgtacccttttcatttcattgt |
669 |
Q |
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| T |
40893180 |
actaaacaataggatcaagattacgttccttttttgaagaggtacactaccaccaccttactcttgtatttaggtgtttgtaccattttcatttcattgt |
40893081 |
T |
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| Q |
670 |
aggatgagtcaacagaaaccatatactagcatgggtatcaccataaatacaatctcagaagaaggtgccggcgcattctcgcgactatgatcttcaattt |
769 |
Q |
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| T |
40893080 |
aggatgagtcaacagaaaccatatactagcatggttatcaacataaatacaatcttagaagaaggttccggccaattcaagcgactatgatcatcaattt |
40892981 |
T |
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| Q |
770 |
taacacacattctcttccctc-actgtgtcacagcgtaattttttagctcacataatagtggtgtgtgtgtgagaaacacatgttagg-tgagagtggat |
867 |
Q |
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| T |
40892980 |
aaacacaaattcccttccctcaattgtgtcagtgcttaattttttagctcatattattgttgtttgtgtgtgaataacacatgttaggttgagagtggat |
40892881 |
T |
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| Q |
868 |
gggaaagcattgcacaatcaccatagaaagaaatattttcatatacaagtttg |
920 |
Q |
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| T |
40892880 |
-ggaaagcattgcacaatcaccatagtaag-aatatttacatatacaagtttg |
40892830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 40893756 - 40893700
Alignment:
| Q |
7 |
acccctggccctggggatatactcgagcatggagcagtcctcgaattcatcctctaa |
63 |
Q |
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| T |
40893756 |
acccctggccctggggatatactcgagcatggagcagtcctcgaattcatcctctaa |
40893700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 753 - 920
Target Start/End: Complemental strand, 44144484 - 44144317
Alignment:
| Q |
753 |
actatgatcttcaattttaacacacattctcttccctcact-gtgtcacagcgtaattttttagctcacataatagtggtgtgtgtgtgagaaacacatg |
851 |
Q |
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||||||||| ||||||| | |||| |||| ||||||||| | |||||| || | |||||| |||||| || || || || ||||||||| |||||||| |
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| T |
44144484 |
actatgatcatcaatttaatcacaaattcccttccctcaattgtgtcagtgcttgatttttgagctcatattattgttgtttgtgtgtgaataacacatg |
44144385 |
T |
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| Q |
852 |
ttaggt-gagagtggatgggaaagcattgcacaatcaccatagaaagaaatattttcatatacaagtttg |
920 |
Q |
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| T |
44144384 |
ttaggttgagagtgtatgg-aaagcattgcacaatcaccatagtaag-aatatttacatatacaagtttg |
44144317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 650 - 730
Target Start/End: Complemental strand, 44144616 - 44144533
Alignment:
| Q |
650 |
tacccttttcatttcattgtaggatgagtcaacagaaaccatatact---agcatgggtatcaccataaatacaatctcagaag |
730 |
Q |
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| T |
44144616 |
taccattttcatttcattgtaggatgagtcaacagaaaccatatactagcagcatggttatcaacataaatacaatcttagaag |
44144533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 646
Target Start/End: Complemental strand, 44144706 - 44144660
Alignment:
| Q |
600 |
tttttgaagaggtacactaccaccaccttactcttgtatttaggtgt |
646 |
Q |
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| T |
44144706 |
tttttgaaggtgtacactaccaccaccttactcttgtatttaggtgt |
44144660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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