View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5356-Insertion-11 (Length: 387)

Name: NF5356-Insertion-11
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5356-Insertion-11
NF5356-Insertion-11
[»] chr6 (18 HSPs)
chr6 (67-240)||(24173463-24173640)
chr6 (269-325)||(24173407-24173463)
chr6 (68-142)||(319232-319306)
chr6 (323-357)||(402625-402659)
chr6 (67-113)||(2419800-2419846)
chr6 (323-357)||(13321330-13321364)
chr6 (323-357)||(13901640-13901674)
chr6 (323-357)||(15498628-15498662)
chr6 (323-357)||(16122518-16122552)
chr6 (323-357)||(23604459-23604493)
chr6 (274-304)||(24170032-24170062)
chr6 (323-357)||(25045647-25045681)
chr6 (323-357)||(34915547-34915581)
chr6 (324-357)||(2090658-2090691)
chr6 (324-357)||(13866593-13866626)
chr6 (93-142)||(23912280-23912329)
chr6 (324-357)||(31091445-31091478)
chr6 (321-357)||(8670398-8670434)
[»] chr5 (16 HSPs)
chr5 (68-144)||(10532798-10532874)
chr5 (67-148)||(10399268-10399349)
chr5 (68-139)||(41758717-41758788)
chr5 (321-357)||(14435827-14435863)
chr5 (322-357)||(15521946-15521981)
chr5 (323-357)||(3028012-3028046)
chr5 (323-357)||(7940451-7940485)
chr5 (323-357)||(8284111-8284145)
chr5 (323-357)||(8949811-8949845)
chr5 (323-357)||(20142263-20142297)
chr5 (323-357)||(23260142-23260176)
chr5 (317-347)||(35547254-35547284)
chr5 (324-357)||(4976294-4976327)
chr5 (324-357)||(19571943-19571976)
chr5 (324-357)||(23286478-23286511)
chr5 (324-357)||(43060415-43060448)
[»] chr7 (16 HSPs)
chr7 (68-142)||(41219380-41219454)
chr7 (72-213)||(21612961-21613102)
chr7 (93-142)||(29714306-29714355)
chr7 (70-142)||(37524164-37524236)
chr7 (68-142)||(8260887-8260962)
chr7 (323-357)||(2290020-2290054)
chr7 (327-357)||(23919735-23919765)
chr7 (323-357)||(27813495-27813529)
chr7 (76-142)||(27874038-27874104)
chr7 (323-357)||(33381577-33381611)
chr7 (323-357)||(34012521-34012555)
chr7 (323-356)||(1574718-1574751)
chr7 (324-357)||(31581677-31581710)
chr7 (324-357)||(32118167-32118200)
chr7 (324-357)||(40121262-40121295)
chr7 (323-356)||(42541864-42541897)
[»] chr8 (18 HSPs)
chr8 (314-357)||(29806226-29806269)
chr8 (318-357)||(18111979-18112018)
chr8 (323-357)||(2152244-2152278)
chr8 (323-357)||(12802610-12802644)
chr8 (323-357)||(23487063-23487097)
chr8 (323-357)||(23688169-23688203)
chr8 (327-357)||(23995580-23995610)
chr8 (323-357)||(26502480-26502514)
chr8 (323-357)||(39406824-39406858)
chr8 (324-357)||(5162304-5162337)
chr8 (324-357)||(6050559-6050592)
chr8 (324-357)||(17069848-17069881)
chr8 (324-357)||(17578392-17578425)
chr8 (324-357)||(18641384-18641417)
chr8 (323-356)||(44580615-44580648)
chr8 (324-357)||(44888680-44888713)
chr8 (324-357)||(45283796-45283829)
chr8 (321-357)||(32675761-32675797)
[»] chr4 (29 HSPs)
chr4 (71-138)||(42039026-42039093)
chr4 (68-150)||(32935684-32935766)
chr4 (323-356)||(11469243-11469276)
chr4 (323-356)||(11522185-11522218)
chr4 (93-142)||(49261815-49261864)
chr4 (317-357)||(56432511-56432551)
chr4 (68-151)||(49065556-49065639)
chr4 (323-357)||(4415964-4415998)
chr4 (68-142)||(9242924-9242998)
chr4 (323-357)||(18872716-18872750)
chr4 (323-357)||(20455185-20455219)
chr4 (323-357)||(28501390-28501424)
chr4 (323-357)||(29519903-29519937)
chr4 (323-357)||(32899222-32899256)
chr4 (323-357)||(46949991-46950025)
chr4 (323-357)||(49793090-49793124)
chr4 (324-357)||(7698473-7698506)
chr4 (323-356)||(20768221-20768254)
chr4 (323-356)||(21265219-21265252)
chr4 (324-357)||(25124250-25124283)
chr4 (322-355)||(29508596-29508629)
chr4 (324-357)||(29520168-29520201)
chr4 (323-356)||(30523763-30523796)
chr4 (68-113)||(31823045-31823090)
chr4 (324-357)||(31937076-31937109)
chr4 (324-357)||(39670990-39671023)
chr4 (324-357)||(49373697-49373730)
chr4 (324-357)||(53564360-53564393)
chr4 (324-357)||(55563131-55563164)
[»] chr1 (28 HSPs)
chr1 (68-119)||(48566788-48566839)
chr1 (316-357)||(42276165-42276206)
chr1 (94-142)||(18178925-18178973)
chr1 (71-142)||(18843986-18844057)
chr1 (322-357)||(27037267-27037302)
chr1 (318-357)||(28885836-28885875)
chr1 (68-119)||(46178671-46178722)
chr1 (323-357)||(2489403-2489437)
chr1 (323-357)||(5765994-5766028)
chr1 (323-357)||(7763753-7763787)
chr1 (323-357)||(9413329-9413363)
chr1 (323-357)||(17483732-17483766)
chr1 (323-357)||(25509208-25509242)
chr1 (68-142)||(41871740-41871814)
chr1 (323-357)||(48067633-48067667)
chr1 (323-357)||(48853813-48853847)
chr1 (68-142)||(49597200-49597274)
chr1 (324-357)||(4280130-4280163)
chr1 (324-357)||(21631111-21631144)
chr1 (324-357)||(25227304-25227337)
chr1 (324-357)||(27037534-27037567)
chr1 (324-357)||(38613740-38613773)
chr1 (324-357)||(41317593-41317626)
chr1 (324-357)||(43456625-43456658)
chr1 (319-356)||(45943978-45944015)
chr1 (324-357)||(47754017-47754050)
chr1 (321-357)||(23530539-23530575)
chr1 (67-147)||(26013687-26013767)
[»] chr3 (22 HSPs)
chr3 (68-142)||(25574834-25574908)
chr3 (324-357)||(15095198-15095231)
chr3 (324-357)||(28673035-28673068)
chr3 (316-356)||(12906418-12906458)
chr3 (321-357)||(53686733-53686769)
chr3 (323-357)||(4759355-4759389)
chr3 (323-357)||(10015793-10015827)
chr3 (323-357)||(19897840-19897874)
chr3 (323-357)||(24087339-24087373)
chr3 (323-357)||(28875255-28875289)
chr3 (68-142)||(39415353-39415427)
chr3 (323-357)||(41392884-41392918)
chr3 (323-357)||(42801520-42801554)
chr3 (323-357)||(46845496-46845530)
chr3 (68-142)||(48086850-48086924)
chr3 (324-357)||(4759088-4759121)
chr3 (324-357)||(8321925-8321958)
chr3 (324-357)||(15996777-15996810)
chr3 (324-357)||(45513641-45513674)
chr3 (323-356)||(48904268-48904301)
chr3 (69-149)||(8628431-8628510)
chr3 (321-357)||(35868087-35868123)
[»] scaffold0163 (1 HSPs)
scaffold0163 (317-357)||(1450-1490)
[»] chr2 (23 HSPs)
chr2 (321-357)||(26322297-26322333)
chr2 (321-357)||(41494626-41494662)
chr2 (67-142)||(6903720-6903794)
chr2 (95-150)||(28266006-28266061)
chr2 (323-357)||(12890212-12890246)
chr2 (323-357)||(23465135-23465169)
chr2 (68-142)||(29132640-29132714)
chr2 (323-357)||(31751068-31751102)
chr2 (323-357)||(41422511-41422545)
chr2 (323-357)||(45628619-45628653)
chr2 (324-357)||(2060316-2060349)
chr2 (323-356)||(2199977-2200010)
chr2 (324-357)||(2200244-2200277)
chr2 (324-357)||(3095299-3095332)
chr2 (324-357)||(7116303-7116336)
chr2 (324-357)||(8912878-8912911)
chr2 (324-357)||(18374708-18374741)
chr2 (323-356)||(23083514-23083547)
chr2 (324-357)||(24345682-24345715)
chr2 (324-357)||(28566151-28566184)
chr2 (323-356)||(40680666-40680699)
chr2 (324-356)||(13215825-13215857)
chr2 (321-357)||(40607699-40607735)
[»] scaffold0217 (1 HSPs)
scaffold0217 (68-119)||(25630-25681)
[»] scaffold0237 (1 HSPs)
scaffold0237 (323-357)||(6613-6647)
[»] scaffold0122 (1 HSPs)
scaffold0122 (323-357)||(12328-12362)
[»] scaffold0020 (1 HSPs)
scaffold0020 (323-357)||(164213-164247)
[»] scaffold0674 (1 HSPs)
scaffold0674 (324-357)||(5151-5184)
[»] scaffold0549 (1 HSPs)
scaffold0549 (324-357)||(10186-10219)
[»] scaffold0240 (2 HSPs)
scaffold0240 (324-357)||(18497-18530)
scaffold0240 (324-357)||(18760-18793)
[»] scaffold0161 (1 HSPs)
scaffold0161 (324-357)||(3438-3471)
[»] scaffold0107 (1 HSPs)
scaffold0107 (324-357)||(48654-48687)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 24173640 - 24173463
Alignment:
Q  67 tgtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaactaacgcattggcattattgcatt 166  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||| ||||||||||| |||    
T  24173640 tgtttgttcttcagttctgacagccggccaacatgcgtgagttaacttgcagacaagtcagtggtgcgtgacttaactaacgcaatggcattattgtatt 24173541  T
Q  167 ttcaactgggtgcaagcgaaaaatacaaggggaaaagcagaattctattct----atcaaatatgatgaaattctagt 240  Q
    ||||  |||||||||||||||| |||| | |||  ||||||||| ||||||     |||| |||||||||||||||||    
T  24173540 ttcagttgggtgcaagcgaaaagtacaggaggaggagcagaattatattctctccctcaagtatgatgaaattctagt 24173463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 24173463 - 24173407
Alignment:
Q  269 tttactcttcaaagcccataaaaataccaattgattgaaacaaagtcaaaacacata 325  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24173463 tttactcttcaaagcccataaaaagaccaattgattgaaacaaagtcaaaacacata 24173407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 319306 - 319232
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    ||||||||||||||||||||  ||| ||||| |||||||||||||| ||||| |   ||||||||||||||||||    
T  319306 gtttgttcttcagttctgaccaccacccaacgtgcgtgagttaactcgcgcatagaccagtggtgcatgacttaa 319232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 402659 - 402625
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  402659 atactacctccgtccctaattataagacccttttg 402625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 2419800 - 2419846
Alignment:
Q  67 tgtttgttcttcagttctgacagccagccaacatgcgtgagttaact 113  Q
    |||||||||||||||||||||  || |||||| ||||||||||||||    
T  2419800 tgtttgttcttcagttctgaccaccggccaacttgcgtgagttaact 2419846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 13321364 - 13321330
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  13321364 atactacctccgtccctaattataagacccttttg 13321330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 13901640 - 13901674
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  13901640 atactacctccgtccctaattataagacccttttg 13901674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 15498628 - 15498662
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  15498628 atactacctccgtccctaattataagacccttttg 15498662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 16122552 - 16122518
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  16122552 atactacctccgtccctaattataagacccttttg 16122518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 23604459 - 23604493
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  23604459 atactacctccgtccctaattataagacccttttg 23604493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 304
Target Start/End: Complemental strand, 24170062 - 24170032
Alignment:
Q  274 tcttcaaagcccataaaaataccaattgatt 304  Q
    |||||||||||||||||||||||||||||||    
T  24170062 tcttcaaagcccataaaaataccaattgatt 24170032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 25045681 - 25045647
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  25045681 atactacctccgtccctaattataagacccttttg 25045647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 34915581 - 34915547
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  34915581 atactacctccgtccctaattataagacccttttg 34915547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 2090658 - 2090691
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  2090658 tactacctccgtccctaattataagacccttttg 2090691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 13866593 - 13866626
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  13866593 tactacctccgtccctaattataagacccttttg 13866626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 23912280 - 23912329
Alignment:
Q  93 gccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    |||||| ||||||| |||||| ||||||| | ||||||||||||||||||    
T  23912280 gccaacttgcgtgaattaactcgcgcacatgccagtggtgcatgacttaa 23912329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 31091445 - 31091478
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  31091445 tactacctccgtccctaattataagacccttttg 31091478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 8670434 - 8670398
Alignment:
Q  321 acatactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||||  |||||||||    
T  8670434 acatactacctccgtccctaattatagtacccttttg 8670398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 10532874 - 10532798
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaact 144  Q
    ||||||||||||| ||||||  || |||||| |||||||||||||| ||||||||| ||||||||||||||||||||    
T  10532874 gtttgttcttcagctctgaccaccggccaacttgcgtgagttaactcgcgcacaagccagtggtgcatgacttaact 10532798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 148
Target Start/End: Original strand, 10399268 - 10399349
Alignment:
Q  67 tgtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaactaacg 148  Q
    |||||||||||||||| ||||  || || ||| ||| |||||||||| |||||||||  |||||| ||||||||||||||||    
T  10399268 tgtttgttcttcagttttgaccaccggcaaacgtgcatgagttaactcgcgcacaagctagtggtacatgacttaactaacg 10399349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 41758717 - 41758788
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgact 139  Q
    ||||||||||||||||||||  ||||||||| ||| |||||||||| ||||| | |||| |||||| |||||    
T  41758717 gtttgttcttcagttctgaccaccagccaacgtgcatgagttaactcgcgcataggtcaatggtgcgtgact 41758788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 14435827 - 14435863
Alignment:
Q  321 acatactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||||| |||||||||    
T  14435827 acatactacctccgtccctaattataagacccttttg 14435863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 357
Target Start/End: Complemental strand, 15521981 - 15521946
Alignment:
Q  322 catactacctccgtccctaattataaaacccttttg 357  Q
    |||||| |||||||||||||||||||||||||||||    
T  15521981 catactccctccgtccctaattataaaacccttttg 15521946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 3028012 - 3028046
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  3028012 atactacctccgtccctaattataagacccttttg 3028046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 7940451 - 7940485
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  7940451 atactacctccgtccctaattataagacccttttg 7940485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 8284145 - 8284111
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    |||| ||||||||||||||||||||||||||||||    
T  8284145 ataccacctccgtccctaattataaaacccttttg 8284111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 8949811 - 8949845
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  8949811 atactacctccgtccctaattataagacccttttg 8949845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 20142297 - 20142263
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  20142297 atactacctccgtccctaattataagacccttttg 20142263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 23260176 - 23260142
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  23260176 atactacctccgtccctaattataagacccttttg 23260142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Original strand, 35547254 - 35547284
Alignment:
Q  317 aaacacatactacctccgtccctaattataa 347  Q
    |||||||||||||||||||||||||||||||    
T  35547254 aaacacatactacctccgtccctaattataa 35547284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 4976327 - 4976294
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  4976327 tactacctccgtccctaattataagacccttttg 4976294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 19571976 - 19571943
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  19571976 tactacctccgtccctaattataagacccttttg 19571943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 23286511 - 23286478
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  23286511 tactacctccgtccctaattataagacccttttg 23286478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 43060448 - 43060415
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  43060448 tactacctccgtccctaattataagacccttttg 43060415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 41219380 - 41219454
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||| ||||| | | ||||| ||| ||||||||    
T  41219380 gtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcgcgcataggccagtgatgcgtgacttaa 41219454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 21613102 - 21612961
Alignment:
Q  72 gttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaactaacgcattggcattattgcattttcaa 171  Q
    ||||||||||||||||  || | |||  |||||||||||||| ||||||| | || |||||| ||||||||||| | ||  ||||||| ||  |||||||    
T  21613102 gttcttcagttctgaccaccggtcaagctgcgtgagttaactcgcgcacatgccaatggtgcgtgacttaactagcacaagggcattaatgtcttttcaa 21613003  T
Q  172 ctgggtgcaagcgaaaaatacaaggggaaaagcagaattcta 213  Q
    |||| ||| || ||||| |||| || ||| ||||||| ||||    
T  21613002 ctggatgcgagagaaaagtacagggcgaagagcagaaatcta 21612961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 29714355 - 29714306
Alignment:
Q  93 gccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||||||    
T  29714355 gccaacctgcgtgagttaactcgcgcccaagtcagtggtgcatgacttaa 29714306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 37524164 - 37524236
Alignment:
Q  70 ttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    |||| |||||||||||||  ||||||||| |||||||| ||||| ||||||| | ||||||||| ||||||||    
T  37524164 ttgtacttcagttctgaccaccagccaacgtgcgtgaggtaactcgcgcacaggccagtggtgcgtgacttaa 37524236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 8260962 - 8260887
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaag-tcagtggtgcatgacttaa 142  Q
    |||||||| |||||||||||  || |||||| |||||||||||||| ||||| | | |||||||||| ||||||||    
T  8260962 gtttgttcatcagttctgaccaccggccaacttgcgtgagttaactcgcgcaaaggctcagtggtgcgtgacttaa 8260887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 2290054 - 2290020
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  2290054 atactacctccgtccctaattataagacccttttg 2290020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 357
Target Start/End: Original strand, 23919735 - 23919765
Alignment:
Q  327 tacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||||||||||    
T  23919735 tacctccgtccctaattataaaacccttttg 23919765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 27813495 - 27813529
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  27813495 atactacctccgtccctaattataagacccttttg 27813529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 27874038 - 27874104
Alignment:
Q  76 ttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    ||||||||||||  || |||||| |||||||||||||| ||||| | ||||||||||| || |||||    
T  27874038 ttcagttctgaccaccggccaacgtgcgtgagttaactcgcgcataggtcagtggtgcgtggcttaa 27874104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 33381611 - 33381577
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  33381611 atactacctccgtccctaattataagacccttttg 33381577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 34012555 - 34012521
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  34012555 atactacctccgtccctaattataagacccttttg 34012521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 1574718 - 1574751
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||| ||||||||    
T  1574718 atactacctccgtccctaattataagaccctttt 1574751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 31581677 - 31581710
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  31581677 tactacctccgtccctaattataagacccttttg 31581710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 32118200 - 32118167
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  32118200 tactacctccgtccctaattataagacccttttg 32118167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 40121295 - 40121262
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||| ||||||||||    
T  40121295 tactacctccgtccctaattatagaacccttttg 40121262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 42541897 - 42541864
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||| ||||||||    
T  42541897 atactacctccgtccctaattataagaccctttt 42541864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 29806269 - 29806226
Alignment:
Q  314 tcaaaacacatactacctccgtccctaattataaaacccttttg 357  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  29806269 tcaaaatagatactacctccgtccctaattataaaacccttttg 29806226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 357
Target Start/End: Complemental strand, 18112018 - 18111979
Alignment:
Q  318 aacacatactacctccgtccctaattataaaacccttttg 357  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  18112018 aacatatactacctccgtccctaattataagacccttttg 18111979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 2152278 - 2152244
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  2152278 atactacctccgtccctaattataagacccttttg 2152244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 12802610 - 12802644
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  12802610 atactacctccgtccctaattataagacccttttg 12802644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 23487063 - 23487097
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  23487063 atactacctccgtccctaattataagacccttttg 23487097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 23688203 - 23688169
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  23688203 atactacctccgtccctaattataagacccttttg 23688169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 357
Target Start/End: Original strand, 23995580 - 23995610
Alignment:
Q  327 tacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||||||||||    
T  23995580 tacctccgtccctaattataaaacccttttg 23995610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 26502480 - 26502514
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||| |||||||||||||||||||||||||||    
T  26502480 atactacatccgtccctaattataaaacccttttg 26502514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 39406858 - 39406824
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| ||||||||||    
T  39406858 atactacctccgtccctaattatagaacccttttg 39406824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 5162304 - 5162337
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  5162304 tactacctccgtccctaattataagacccttttg 5162337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 6050592 - 6050559
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  6050592 tactacctccgtccctaattataagacccttttg 6050559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 17069881 - 17069848
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  17069881 tactacctccgtccctaattataagacccttttg 17069848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 17578392 - 17578425
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  17578392 tactacctccgtccctaattataagacccttttg 17578425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 18641417 - 18641384
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  18641417 tactacctccgtccctaattataagacccttttg 18641384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 44580615 - 44580648
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||| ||||||||    
T  44580615 atactacctccgtccctaattataagaccctttt 44580648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 44888680 - 44888713
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  44888680 tactacctccgtccctaattataagacccttttg 44888713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 45283829 - 45283796
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  45283829 tactacctccgtccctaattataagacccttttg 45283796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 32675797 - 32675761
Alignment:
Q  321 acatactacctccgtccctaattataaaacccttttg 357  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  32675797 acatactccctccgtccctaattataagacccttttg 32675761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 42039093 - 42039026
Alignment:
Q  71 tgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgac 138  Q
    |||||||||||||||||  || |||||| |||||||||||||| ||||||| | ||||||||| ||||    
T  42039093 tgttcttcagttctgaccaccggccaacgtgcgtgagttaactcgcgcacaggccagtggtgcgtgac 42039026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 32935766 - 32935684
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaactaacgca 150  Q
    ||||||||||||| |||| |  || |||||| |||||||||||||| ||||| | |  |||||||| ||||||||||||||||    
T  32935766 gtttgttcttcagctctggccaccggccaacgtgcgtgagttaactcgcgcataggcaagtggtgcgtgacttaactaacgca 32935684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 11469276 - 11469243
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||||||||||||    
T  11469276 atactacctccgtccctaattataaaaccctttt 11469243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 11522185 - 11522218
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||||||||||||    
T  11522185 atactacctccgtccctaattataaaaccctttt 11522218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 49261815 - 49261864
Alignment:
Q  93 gccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    |||||| |||||| ||||||||||||||| ||||||||||| ||||||||    
T  49261815 gccaacctgcgtgggttaacttgcgcacatgtcagtggtgcgtgacttaa 49261864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 56432511 - 56432551
Alignment:
Q  317 aaacacatactacctccgtccctaattataaaacccttttg 357  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  56432511 aaacaaatactacctccgtccctaattataagacccttttg 56432551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 49065556 - 49065639
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaactaacgcat 151  Q
    ||||||||||||| ||||||  || |||||  |||||||||||||| ||||| | | ||||||||| |||||||| | ||||||    
T  49065556 gtttgttcttcagctctgaccaccggccaaggtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaagtcacgcat 49065639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 4415964 - 4415998
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  4415964 atactacctccgtccctaattataagacccttttg 4415998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 9242924 - 9242998
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    ||||||||||||||||||||  || |||||| |||||||||||||| ||| |    |||||||||| ||||||||    
T  9242924 gtttgttcttcagttctgactaccggccaacttgcgtgagttaactcgcggaaggctcagtggtgcgtgacttaa 9242998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 18872716 - 18872750
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  18872716 atactacctccgtccctaattataagacccttttg 18872750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 20455219 - 20455185
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  20455219 atactacctccgtccctaattataagacccttttg 20455185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 28501424 - 28501390
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  28501424 atactacctccgtccctaattataagacccttttg 28501390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 29519903 - 29519937
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||| |||||||||||||||||||||||||||    
T  29519903 atactacatccgtccctaattataaaacccttttg 29519937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 32899256 - 32899222
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  32899256 atactacctccgtccctaattataagacccttttg 32899222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 46949991 - 46950025
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  46949991 atactacctccgtccctaattataagacccttttg 46950025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 49793090 - 49793124
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  49793090 atactacctccgtccctaattataagacccttttg 49793124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 7698506 - 7698473
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  7698506 tactacctccgtccctaattataagacccttttg 7698473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 20768254 - 20768221
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||| ||||||||||||||||||    
T  20768254 atactacctccgtccttaattataaaaccctttt 20768221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 21265219 - 21265252
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||| ||||||||    
T  21265219 atactacctccgtccctaattataagaccctttt 21265252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 25124283 - 25124250
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  25124283 tactacctccgtccctaattataagacccttttg 25124250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 29508596 - 29508629
Alignment:
Q  322 catactacctccgtccctaattataaaacccttt 355  Q
    |||||||||||||||||||||||||| |||||||    
T  29508596 catactacctccgtccctaattataagacccttt 29508629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 29520201 - 29520168
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  29520201 tactacctccgtccctaattataagacccttttg 29520168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 30523763 - 30523796
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||| ||||||||    
T  30523763 atactacctccgtccctaattataagaccctttt 30523796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 31823090 - 31823045
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaact 113  Q
    ||||||||||||||||||||  || |||||| ||||||||||||||    
T  31823090 gtttgttcttcagttctgaccaccggccaacgtgcgtgagttaact 31823045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 31937076 - 31937109
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  31937076 tactacctccgtccctaattataagacccttttg 31937109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 39671023 - 39670990
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  39671023 tactacctccgtccctaattataagacccttttg 39670990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 49373730 - 49373697
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  49373730 tactacctccgtccctaattataagacccttttg 49373697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 53564393 - 53564360
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  53564393 tactacctccgtccctaattataagacccttttg 53564360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 55563164 - 55563131
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  55563164 tactacctccgtccctaattataagacccttttg 55563131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 48566839 - 48566788
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgca 119  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||| |||||    
T  48566839 gtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcgcgca 48566788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 42276206 - 42276165
Alignment:
Q  316 aaaacacatactacctccgtccctaattataaaacccttttg 357  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  42276206 aaaaaacatactacctccgtccctaattataagacccttttg 42276165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 18178973 - 18178925
Alignment:
Q  94 ccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    ||||| ||||||||||||||||||| || ||||||| ||||||||||||    
T  18178973 ccaacctgcgtgagttaacttgcgctcatgtcagtgatgcatgacttaa 18178925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 18843986 - 18844057
Alignment:
Q  71 tgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    ||||||||||||||||   || |||||| ||||||||||||||||||||||   ||||||||  ||||||||    
T  18843986 tgttcttcagttctgatcaccggccaacgtgcgtgagttaacttgcgcacataccagtggtgtgtgacttaa 18844057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 357
Target Start/End: Original strand, 27037267 - 27037302
Alignment:
Q  322 catactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||||| |||||||||    
T  27037267 catactacctccgtccctaattataagacccttttg 27037302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 28885836 - 28885875
Alignment:
Q  318 aacacatactacctccgtccctaattataaaacccttttg 357  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  28885836 aacatatactacctccgtccctaattataagacccttttg 28885875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 46178722 - 46178671
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgca 119  Q
    ||||||||||||||||||||  || | ||||||||||||||||||| |||||    
T  46178722 gtttgttcttcagttctgaccaccggtcaacatgcgtgagttaactcgcgca 46178671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 2489437 - 2489403
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||| |||||||||||||||||||||||||    
T  2489437 atactaccttcgtccctaattataaaacccttttg 2489403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 5766028 - 5765994
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  5766028 atactacctccgtccctaattataagacccttttg 5765994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 7763787 - 7763753
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  7763787 atactacctccgtccctaattataagacccttttg 7763753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 9413363 - 9413329
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  9413363 atactacctccgtccctaattataagacccttttg 9413329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 17483732 - 17483766
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  17483732 atactacctccgtccctaattataagacccttttg 17483766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 25509208 - 25509242
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  25509208 atactacctccgtccctaattataagacccttttg 25509242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 41871814 - 41871740
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    ||||||||||||||||| ||  || |||||| |||||||||||||| ||||| | | ||||||||| | ||||||    
T  41871814 gtttgttcttcagttcttaccaccggccaacgtgcgtgagttaactcgcgcataggccagtggtgcgttacttaa 41871740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 48067633 - 48067667
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||| ||||||||||||    
T  48067633 atactacctccgtccctaattacaaaacccttttg 48067667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 48853813 - 48853847
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||| |||||||||||||||||||    
T  48853813 atactacctccgtccataattataaaacccttttg 48853847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 49597274 - 49597200
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    |||||||||| |||||||||  ||  ||||| |||||||||||||| ||||| | | ||||||||| ||||||||    
T  49597274 gtttgttctttagttctgaccaccgaccaacgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaa 49597200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 4280163 - 4280130
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  4280163 tactacctccgtccctaattataagacccttttg 4280130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 21631144 - 21631111
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  21631144 tactacctccgtccctaattataagacccttttg 21631111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 25227304 - 25227337
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  25227304 tactacctccgtccctaattataagacccttttg 25227337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 27037567 - 27037534
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  27037567 tactacctccgtccctaattataagacccttttg 27037534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 38613773 - 38613740
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  38613773 tactacctccgtccctaattataagacccttttg 38613740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 41317593 - 41317626
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  41317593 tactacctccgtccctaattataagacccttttg 41317626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 43456658 - 43456625
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  43456658 tactacctccgtccctaattataagacccttttg 43456625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Complemental strand, 45944015 - 45943978
Alignment:
Q  319 acacatactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||||||| || |||||    
T  45944015 acacatactacctccgtccctaattataagactctttt 45943978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 47754017 - 47754050
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||||| ||||||    
T  47754017 tactacctccgtccctaattataaaactcttttg 47754050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 23530539 - 23530575
Alignment:
Q  321 acatactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  23530539 acatactacctccgtccttaattataagacccttttg 23530575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 26013687 - 26013767
Alignment:
Q  67 tgtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaactaac 147  Q
    |||||||||||||||||||||  || |  ||| | || ||||||||  |||||||  |||||||||| |||||||||||||    
T  26013687 tgtttgttcttcagttctgaccaccgggtaacgtacgcgagttaacccgcgcacagatcagtggtgcgtgacttaactaac 26013767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 25574908 - 25574834
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    ||||||||||||||||||||  ||  ||||| |||||||||||||| ||||| | | ||||||||| ||||||||    
T  25574908 gtttgttcttcagttctgaccaccgaccaacgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaa 25574834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 15095198 - 15095231
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||||||||||||    
T  15095198 tactacctccgtccctaattataaaacccttttg 15095231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 28673035 - 28673068
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||||||||||||    
T  28673035 tactacctccgtccctaattataaaacccttttg 28673068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 12906458 - 12906418
Alignment:
Q  316 aaaacacatactacctccgtccctaattataaaaccctttt 356  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  12906458 aaaaaacatactacctccgtccctaattataagaccctttt 12906418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 53686733 - 53686769
Alignment:
Q  321 acatactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||| ||||||||||||||||||||||||    
T  53686733 acatactacctctgtccctaattataaaacccttttg 53686769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 4759389 - 4759355
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  4759389 atactacctccgtccctaattataagacccttttg 4759355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 10015827 - 10015793
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  10015827 atactacctccgtccctaattataagacccttttg 10015793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 19897874 - 19897840
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  19897874 atactacctccgtccctaattataagacccttttg 19897840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 24087373 - 24087339
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  24087373 atactacctccgtccctaattataagacccttttg 24087339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 28875289 - 28875255
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  28875289 atactacctccgtccctaattataagacccttttg 28875255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 39415427 - 39415353
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    ||||||||||||||||| ||   | |||||| ||||||||||||||  |||||| | ||||||||| ||||||||    
T  39415427 gtttgttcttcagttctaaccatcggccaacgtgcgtgagttaactcacgcacaggccagtggtgcgtgacttaa 39415353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 41392918 - 41392884
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  41392918 atactacctccgtccctaattataagacccttttg 41392884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 42801520 - 42801554
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  42801520 atactacctccgtccctaattataagacccttttg 42801554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 46845530 - 46845496
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  46845530 atactacctccgtccctaattataagacccttttg 46845496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 48086924 - 48086850
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    |||||||  |||||||||||  || |||||| |||||||||||||| ||||| | | ||||||||| ||||||||    
T  48086924 gtttgttagtcagttctgaccaccggccaacgtgcgtgagttaactcgcgcataggccagtggtgcgtgacttaa 48086850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 4759088 - 4759121
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  4759088 tactacctccgtccctaattataagacccttttg 4759121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 8321925 - 8321958
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  8321925 tactacctccgtccctaattataagacccttttg 8321958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 15996810 - 15996777
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  15996810 tactacctccgtccctaattataagacccttttg 15996777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 45513674 - 45513641
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  45513674 tactacctccgtccctaattataagacccttttg 45513641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 48904301 - 48904268
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||| ||||||||    
T  48904301 atactacctccgtccctaattataagaccctttt 48904268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 8628510 - 8628431
Alignment:
Q  69 tttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaactaacgc 149  Q
    ||||||||||||||||||   || |||| | ||||||||||||||||| ||| |  ||||||||| |||||||||| ||||    
T  8628510 tttgttcttcagttctgatcaccggccacc-tgcgtgagttaacttgcccaccaaccagtggtgcgtgacttaactgacgc 8628431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 35868123 - 35868087
Alignment:
Q  321 acatactacctccgtccctaattataaaacccttttg 357  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  35868123 acatactccctccgtccctaattataagacccttttg 35868087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 1490 - 1450
Alignment:
Q  317 aaacacatactacctccgtccctaattataaaacccttttg 357  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  1490 aaacaaatactacctccgtccctaattataagacccttttg 1450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 26322333 - 26322297
Alignment:
Q  321 acatactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||||| |||||||||    
T  26322333 acatactacctccgtccctaattataagacccttttg 26322297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 41494662 - 41494626
Alignment:
Q  321 acatactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||||| |||||||||    
T  41494662 acatactacctccgtccctaattataagacccttttg 41494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 6903720 - 6903794
Alignment:
Q  67 tgtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    |||||||||||||||||||||  || ||||| ||| ||||||||||| ||||||  | ||||||||| ||||||||    
T  6903720 tgtttgttcttcagttctgaccaccggccaa-atgtgtgagttaactcgcgcaccggccagtggtgcgtgacttaa 6903794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 28266061 - 28266006
Alignment:
Q  95 caacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaactaacgca 150  Q
    |||| |||||||||||||| ||||||| ||||||||||| |||| ||||| |||||    
T  28266061 caacgtgcgtgagttaactcgcgcacatgtcagtggtgcgtgacctaactcacgca 28266006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 12890246 - 12890212
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  12890246 atactacctccgtccctaattataagacccttttg 12890212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 23465135 - 23465169
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||| ||||||||||||||||||    
T  23465135 atactacctccgtcccaaattataaaacccttttg 23465169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 29132640 - 29132714
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgcacaagtcagtggtgcatgacttaa 142  Q
    ||||||||||||| ||||||  || |||||| |||||||||||||| ||||| | | | ||||||| ||||||||    
T  29132640 gtttgttcttcagctctgaccaccggccaacgtgcgtgagttaactcgcgcataggccggtggtgcgtgacttaa 29132714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 31751068 - 31751102
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  31751068 atactacctccgtccctaattataagacccttttg 31751102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 41422511 - 41422545
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  41422511 atactacctccgtccctaattataagacccttttg 41422545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 45628619 - 45628653
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||||| ||||||||    
T  45628619 atactacctccgtccctaattataaagcccttttg 45628653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 2060316 - 2060349
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  2060316 tactacctccgtccctaattataagacccttttg 2060349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 2199977 - 2200010
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||| ||||||||    
T  2199977 atactacctccgtccctaattataagaccctttt 2200010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 2200277 - 2200244
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  2200277 tactacctccgtccctaattataagacccttttg 2200244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 3095299 - 3095332
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  3095299 tactacctccgtccctaattataagacccttttg 3095332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 7116336 - 7116303
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  7116336 tactacctccgtccctaattataagacccttttg 7116303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 8912911 - 8912878
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  8912911 tactacctccgtccctaattataagacccttttg 8912878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 18374741 - 18374708
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  18374741 tactacctccgtccctaattataagacccttttg 18374708  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 23083514 - 23083547
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    ||||||||||||||||||||||||| ||||||||    
T  23083514 atactacctccgtccctaattataagaccctttt 23083547  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 24345715 - 24345682
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  24345715 tactacctccgtccctaattataagacccttttg 24345682  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 28566151 - 28566184
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  28566151 tactacctccgtccctaattataagacccttttg 28566184  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 40680699 - 40680666
Alignment:
Q  323 atactacctccgtccctaattataaaaccctttt 356  Q
    |||||||||||||||||||||||||||| |||||    
T  40680699 atactacctccgtccctaattataaaactctttt 40680666  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 356
Target Start/End: Complemental strand, 13215857 - 13215825
Alignment:
Q  324 tactacctccgtccctaattataaaaccctttt 356  Q
    |||||||||||||||||||||||| ||||||||    
T  13215857 tactacctccgtccctaattataagaccctttt 13215825  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 40607699 - 40607735
Alignment:
Q  321 acatactacctccgtccctaattataaaacccttttg 357  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  40607699 acatactccctccgtccctaattataagacccttttg 40607735  T

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Target: scaffold0217 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 25681 - 25630
Alignment:
Q  68 gtttgttcttcagttctgacagccagccaacatgcgtgagttaacttgcgca 119  Q
    ||||||||||||||||||||  || |||||| |||||||||||||| |||||    
T  25681 gtttgttcttcagttctgaccaccggccaacttgcgtgagttaactcgcgca 25630  T

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Target: scaffold0237 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 6647 - 6613
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  6647 atactacctccgtccctaattataagacccttttg 6613  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 12362 - 12328
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||| |||||||||||||||||||||||||||||    
T  12362 atactccctccgtccctaattataaaacccttttg 12328  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Original strand, 164213 - 164247
Alignment:
Q  323 atactacctccgtccctaattataaaacccttttg 357  Q
    ||||||||||||||||||||||||| |||||||||    
T  164213 atactacctccgtccctaattataagacccttttg 164247  T

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Target: scaffold0674 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 5151 - 5184
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  5151 tactacctccgtccctaattataagacccttttg 5184  T

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Target: scaffold0549 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 10219 - 10186
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  10219 tactacctccgtccctaattataagacccttttg 10186  T

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Target: scaffold0240 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 18497 - 18530
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  18497 tactacctccgtccctaattataagacccttttg 18530  T

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Target: scaffold0240; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Complemental strand, 18793 - 18760
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  18793 tactacctccgtccctaattataagacccttttg 18760  T

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Target: scaffold0161 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 3438 - 3471
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  3438 tactacctccgtccctaattataagacccttttg 3471  T

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Target: scaffold0107 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 357
Target Start/End: Original strand, 48654 - 48687
Alignment:
Q  324 tactacctccgtccctaattataaaacccttttg 357  Q
    |||||||||||||||||||||||| |||||||||    
T  48654 tactacctccgtccctaattataagacccttttg 48687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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