View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5356-Insertion-13 (Length: 235)
Name: NF5356-Insertion-13
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5356-Insertion-13 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 36724930 - 36725159
Alignment:
| Q |
8 |
ataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacaacaacgacac--acgccaaaca |
105 |
Q |
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| T |
36724930 |
ataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacagcaacgacacacacgccaaaca |
36725029 |
T |
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| Q |
106 |
agattttttattttaggtggaactttgagtttccaaactagattccaatgatctggtaaatgcaaatgggtgttattagcaatttcattaacacatattc |
205 |
Q |
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| T |
36725030 |
agattttttattttaggtggaactttgagtttccaaactagattccaatgatccagtaaatgcaaataggtgttattagcaatttcattaacacatattc |
36725129 |
T |
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| Q |
206 |
tataggcactctgcaccgagtacttgccat |
235 |
Q |
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| T |
36725130 |
tataggcacactgcactgagtactttccat |
36725159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 716799 - 716721
Alignment:
| Q |
8 |
ataattacttccacatattacacaatcaattggacaatgaacccatttactacttaggcgtgctcatgtatgaaaacaa |
86 |
Q |
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| T |
716799 |
ataattactttcacacattacacaatctattggacaatgaacctatctactaattaggtgtgctcatgttggaaaacaa |
716721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 8266782 - 8266676
Alignment:
| Q |
109 |
ttttttattttaggtggaactttgagtttccaaactagattccaatgatctggtaaatgcaaatgggtgttattagcaatttcattaacacatattctat |
208 |
Q |
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| T |
8266782 |
ttttttatcttaggtaggactttgagtttccaaactaaatttcaacgacatggtatatgcaaatgagaattattagcaatttcacttacacatattctat |
8266683 |
T |
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| Q |
209 |
aggcact |
215 |
Q |
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| T |
8266682 |
aggcact |
8266676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 33907504 - 33907552
Alignment:
| Q |
97 |
cgccaaacaagattttttattttaggtggaactttgagtttccaaacta |
145 |
Q |
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| T |
33907504 |
cgccaaattagattttttattttaggtggcactttgagcttccacacta |
33907552 |
T |
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