View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5356-Insertion-3 (Length: 752)
Name: NF5356-Insertion-3
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5356-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 8 - 752
Target Start/End: Original strand, 39220513 - 39221257
Alignment:
| Q |
8 |
ttggttatgtcatgcaacgcaaagagtgcggcttttcaggttgtgcgctatgagggagcaaagggtccaattttgagcatccgtgaagatcaagaatcag |
107 |
Q |
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| T |
39220513 |
ttggttatgtcatgcaacgcaaagagtgcggcttttcaggttgtgcgctatgagggagcaaagggtccaattttgagcatccgtgaagatcaagaatcag |
39220612 |
T |
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| Q |
108 |
ctgagttttggattgctctttctgatcagcaacgtttgtcaggtgattctgataaacaactggttttgcctactgaaaagatggagattggtctaagaaa |
207 |
Q |
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| T |
39220613 |
ctgagttttggattgctctttctgatcagcaacgtttgtcaggtgattctgataaacaactggttttgcctactgaaaagatggagattggtctaagaaa |
39220712 |
T |
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| Q |
208 |
agttgatgcttatgatttggattttgagattttccacaaggcaatttctggtggggttgttccacctttttctgtagctaattctggatcagaaacttct |
307 |
Q |
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| T |
39220713 |
agttgatgcttatgatttggattttgagattttccacaaggcaatttctggtggggttgttccacctttttctgtagctaattctggatcagaaacttct |
39220812 |
T |
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| Q |
308 |
cttcctgctacaggacatggttgggcaagattgaggaggaaatttgctagtggtgtcatgaaagaaatcttaacatctcccaaatggaagtgtgatgtga |
407 |
Q |
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| T |
39220813 |
cttcctgctacagaacatggttgggcaagattgaggaggaaatttgctagtggtgtcatgaaagaaatcttaacatctcccaaatggaagtgtgatgtga |
39220912 |
T |
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| Q |
408 |
ttatggaggaagaaaaacaagattttgcagctgatgatgatcccttgtcagcgtcgccgtcatcaagtcatcgaagtgactgtggttctccagattcttt |
507 |
Q |
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| T |
39220913 |
ttatggaggaagaaaaacaagattttgcagctgatgatgatcccttgtcagcgtcgccgtcatcaagtcatccaagtgactgtggttctccagattcttt |
39221012 |
T |
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| Q |
508 |
tgaatgttatccgaacagcttaagcaaagcaaaagatactgatgaagccatggacttgtcagaatctgattctggtgttgcttctttgatgccactatct |
607 |
Q |
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| T |
39221013 |
tgaatgttatccgaacagcttaagcaaggcaaaagatactgatgaagccatggacttgtctgaatctgattctggtgttgcttctttgatgccactatct |
39221112 |
T |
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| Q |
608 |
ccttgtggcacttcttttccttgttgttttccaagcagcagcccaagattcaattccaagtcgccaacactttcaccttcaagttctgattatgcgagtt |
707 |
Q |
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| T |
39221113 |
ccttgtggcacttcttttccttgttgttttccaagcagcagcccaagattcaattccaagtcgccaacactttcaccttcaagttctgattatgcgagtt |
39221212 |
T |
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| Q |
708 |
cgtttacattttcgccttcctctaccaattggtctgacttgtcat |
752 |
Q |
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| T |
39221213 |
cgtttacattttcgccttcctctaccaattggtctgacttgtcat |
39221257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 203 - 371
Target Start/End: Original strand, 37347951 - 37348119
Alignment:
| Q |
203 |
agaaaagttgatgcttatgatttggattttgagattttccacaaggcaatttctggtggggttgttccacctttttctgtagctaattctggatcagaaa |
302 |
Q |
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| T |
37347951 |
agaaaagttgatgagtatgatttggattttgggatttttcacaaagcacttgcagggggtgttgttccacctttttctgtatctaatacaggatcagaaa |
37348050 |
T |
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| Q |
303 |
cttctcttcctgctacaggacatggttgggcaagattgaggaggaaatttgctagtggtgtcatgaaag |
371 |
Q |
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| T |
37348051 |
ccttgcttcctgctagagaaaatagctggggaagactaaggaggaagcttgctaatggtatcatgaaag |
37348119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 661 - 752
Target Start/End: Original strand, 37348418 - 37348509
Alignment:
| Q |
661 |
ttccaagtcgccaacactttcaccttcaagttctgattatgcgagttcgtttacattttcgccttcctctaccaattggtctgacttgtcat |
752 |
Q |
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| T |
37348418 |
ttccaagtcgctgacactttctccttccaattctgattgtgatagttcctttacattttcgcctgcatctacaaattggtctgatttgtcat |
37348509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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