View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5356-Insertion-7 (Length: 172)
Name: NF5356-Insertion-7
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5356-Insertion-7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 4e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 4e-86
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 49008885 - 49008721
Alignment:
| Q |
8 |
cttctatcctcaatttgtatgccaccttttcatttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgtt |
107 |
Q |
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| T |
49008885 |
cttctatcctcaacttgtatgccaccttttcatttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgtt |
49008786 |
T |
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| Q |
108 |
ggctacgtagatggttggttcctctccaacattggttactgttctttgaaattcttgtgtaatca |
172 |
Q |
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| T |
49008785 |
ggctacgtagatggttggttcctctccaacattggttactgttctttgaaattcttgtgtaatca |
49008721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 9947862 - 9947920
Alignment:
| Q |
52 |
aacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggc |
110 |
Q |
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| T |
9947862 |
aacaccaacttgtttgggataacactgacatgaaaccctttgataggagtaatgttggc |
9947920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 8958694 - 8958637
Alignment:
| Q |
37 |
tcatttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaa |
94 |
Q |
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| T |
8958694 |
tcattcttctcattgaataccaacttgtttgggataacactgacatggaacccttcaa |
8958637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 8945391 - 8945503
Alignment:
| Q |
52 |
aacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggctacgtagatggttggttcctctccaacattggttactgttc |
151 |
Q |
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| T |
8945391 |
aacatcaacttatttgggatagcactaacacggtatccttcaacaggcataatgctagcaacataaatggcttgtccctcaccaacattggtaactgttc |
8945490 |
T |
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| Q |
152 |
tttgaaattcttg |
164 |
Q |
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| T |
8945491 |
tgtgaaattcttg |
8945503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 8975089 - 8975049
Alignment:
| Q |
52 |
aacaccaacttgtttgggataacactaacatggaacccttc |
92 |
Q |
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| T |
8975089 |
aacaccaacttatttgggataactctaacatggaacccttc |
8975049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 25927947 - 25927991
Alignment:
| Q |
37 |
tcatttttctccttaaacaccaacttgtttgggataacactaaca |
81 |
Q |
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| T |
25927947 |
tcattcttctcattaaacactaacttgtttgggataacactaaca |
25927991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 34962129 - 34962287
Alignment:
| Q |
7 |
acttctatcctcaatttgtatgccaccttttcatttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgt |
106 |
Q |
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| T |
34962129 |
acttcaatcctcaatttgtagcttagcttctcattcttctcattaaacaccaaattgtttgggataacagtgacacgaaaccctttaattggagcaatgc |
34962228 |
T |
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| Q |
107 |
tggctacgtagatggttggttcctctccaacattggttactgttctttgaaattcttgt |
165 |
Q |
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| T |
34962229 |
tagcaacataaattgcttgtccgtcaccaacattggtaactgttctacgaaattcttgt |
34962287 |
T |
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