View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5356-Insertion-8 (Length: 493)

Name: NF5356-Insertion-8
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5356-Insertion-8
NF5356-Insertion-8
[»] chr5 (1 HSPs)
chr5 (83-493)||(18609265-18609675)


Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 83 - 493
Target Start/End: Original strand, 18609265 - 18609675
Alignment:
Q  83 atggagacaacatccaagtgcccttgggaactaggggatggagggacatgttctaatctttttcattcttgataaattttcatcaaacctcttcattata 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18609265 atggagacaacatccaagtgcccttgggaactaggggatggagggacatgttctaatctttttcattcttgataaattttcatcaaacctcttcattata 18609364  T
Q  183 ctatcttctaaacctttacactcattaatttttgggtgaattgaagtcttttgactaaaagtactatcacaaatccttatgttcaagattaagtgaaaca 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18609365 ctatcttctaaacctttacactcattaatttttgggtgaattgaagtcttttgactaaaagtactatcacaaatccttatgttcaagattaagtgaaaca 18609464  T
Q  283 ctattctcacccatcttattagtttaataatataaatcttgaatcatagaagaaattttattcnnnnnnnttacatgatacttgtccctaatttcgggcg 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  18609465 ctattctcacccatcttattagtttaataatataaatcttgaatcatagaagaaattttattcaaaaaaattacatgatacttgtccctaatttcgggcg 18609564  T
Q  383 gagagctttcgtgcaaccattggtattcgttttgtgccatatcttttgagggagaagaaatcctctattcgtttattcatcaaggcgcctccccacgaaa 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18609565 gagagctttcgtgcaaccattggtattcgttttgtgccatatcttttgagggagaagaaatcttctattcgtttattcatcaaggcgcctccccacgaaa 18609664  T
Q  483 atctatcatca 493  Q
    |||||||||||    
T  18609665 atctatcatca 18609675  T

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