View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5356-Insertion-9 (Length: 440)
Name: NF5356-Insertion-9
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5356-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 39812771 - 39813011
Alignment:
| Q |
8 |
gttatcaatggtgaatctagctgggcaaaagaacaaatgataaaaacttgatgaaggaaaagataaatgagaaatgataagcgcgagaaaggatttttga |
107 |
Q |
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| T |
39812771 |
gttatcaatggtgaatctagctgggcaaaagaacaaatgataaaaacttgatgaaggaaaagataaatgagaaatgataagcgcgagaaaggatttttga |
39812870 |
T |
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| Q |
108 |
gcactagaatttgttgtcaaacttaaaagttagttgagtattcaactattagttctcaataatgattttatttgttctcaacgtgattgcattgaggtat |
207 |
Q |
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| T |
39812871 |
gcactagaatttgttgtcgaacttaaaagttactcgagtattcaactattagttctcaataatgattttatttgttctcaacgtgattgcattgaggtat |
39812970 |
T |
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| Q |
208 |
gaaaattgtccttcatttgtgagagtttctctagagaatgt |
248 |
Q |
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| T |
39812971 |
gaaaattgtccttcatttgtgagagtttctctagagaatgt |
39813011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 324 - 440
Target Start/End: Original strand, 39813087 - 39813203
Alignment:
| Q |
324 |
tgtgaggaaattttgttgtttgattgattatgtttaaaatgaaatttacaagtggtgtttattgacaagtgtttcgtgcgaacttgagcgttactctaca |
423 |
Q |
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| T |
39813087 |
tgtgaggaaattttgttgtttgattgattatgtttaaaatgaaatttacaagtggtgtttatagacaagtgtttcgtgcgaacttgagcgttactctaca |
39813186 |
T |
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| Q |
424 |
cacgtgacatgtcatat |
440 |
Q |
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| T |
39813187 |
cacgtgacatgtcatat |
39813203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 39815284 - 39815431
Alignment:
| Q |
8 |
gttatcaatggtgaatctagctgggcaaaagaacaaatgataaaaacttgatgaaggaaaagataaatgagaaatgataagcgcgagaaaggatttttga |
107 |
Q |
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| T |
39815284 |
gttatcaatggtgaatccagtcgggcaagagaacaaatgataaaaacttgatgaaggaaaatataaatgagaaatgataagcatgacaaaggatttttta |
39815383 |
T |
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| Q |
108 |
gcactagaatttgttgtcaaacttaaaagttagttgagtattcaacta |
155 |
Q |
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| T |
39815384 |
taactagaatttgttgtcgaacttaaaagttaatggagtattcaacta |
39815431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 398
Target Start/End: Original strand, 39815650 - 39815724
Alignment:
| Q |
324 |
tgtgaggaaattttgttgtttgattgattatgtttaaaatgaaatttacaagtggtgtttattgacaagtgtttc |
398 |
Q |
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| T |
39815650 |
tgtgaggaaattttgttgtttgattgattatgcttaaaatgaaatttacaactggtgtttataaacaattgtttc |
39815724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 39815491 - 39815578
Alignment:
| Q |
162 |
ctcaataatgattttatttgttctcaacgtgattgcattgaggtatgaa-aattgtccttcatttgtgagagtttctctagagaatgt |
248 |
Q |
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| T |
39815491 |
ctcaatagtgattttatttgttctcaacgtgattaccttgaggaatgaactattgtccttcacttgcgagagtttatctagagaatgt |
39815578 |
T |
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