View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5356_high_4 (Length: 240)

Name: NF5356_high_4
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5356_high_4
NF5356_high_4
[»] chr7 (2 HSPs)
chr7 (19-223)||(1808181-1808385)
chr7 (135-203)||(46987086-46987149)
[»] chr5 (4 HSPs)
chr5 (135-205)||(6624774-6624839)
chr5 (170-210)||(18619029-18619069)
chr5 (133-205)||(32200443-32200510)
chr5 (137-205)||(37932328-37932391)
[»] chr8 (2 HSPs)
chr8 (133-205)||(11708984-11709051)
chr8 (138-205)||(13575287-13575349)
[»] chr4 (5 HSPs)
chr4 (170-209)||(21317366-21317405)
chr4 (133-203)||(19908692-19908757)
chr4 (136-205)||(38453263-38453327)
chr4 (137-205)||(20799394-20799457)
chr4 (133-205)||(22630356-22630423)
[»] chr1 (5 HSPs)
chr1 (138-205)||(7484691-7484757)
chr1 (128-205)||(21400014-21400086)
chr1 (135-204)||(47528445-47528509)
chr1 (133-205)||(17139513-17139580)
chr1 (138-202)||(34083637-34083700)
[»] chr2 (5 HSPs)
chr2 (135-205)||(7206123-7206188)
chr2 (136-205)||(20565074-20565138)
chr2 (137-213)||(24593366-24593437)
chr2 (133-205)||(31815883-31815950)
chr2 (170-206)||(43484693-43484729)
[»] chr6 (2 HSPs)
chr6 (171-204)||(15869132-15869165)
chr6 (135-203)||(655747-655810)
[»] chr3 (1 HSPs)
chr3 (133-209)||(10922304-10922375)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 1808385 - 1808181
Alignment:
Q  19 gtgtatgcatttttaccacatttatctgcaaacaaaagctgcattatcaaggtttacagtgtcacatgtaatttggccactaacttatagcatgtattaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1808385 gtgtatgcatttttaccacatttatctgcaaacaaaagctgcattatcaaggtttacagtgtcacatgtaatttggccactaacttatagcatgtattat 1808286  T
Q  119 nnnnnnnnngtggtgtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacgaaaacttataacat 218  Q
             |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1808285 tatttttttgtggtgccggggttcgaacctcggaacttgcatatattatgatatgcattgtcactgccaactgagctaagctcacgaaaacttataacat 1808186  T
Q  219 atatt 223  Q
     ||||    
T  1808185 gtatt 1808181  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 46987149 - 46987086
Alignment:
Q  135 cggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcac 203  Q
    ||||||||||||| |||| |||||||||||     |||||||||||  | |||||||||||||||||||    
T  46987149 cggggttcgaaccccggaccttgcatatat-----tatgcattgtccttaccaactgagctaagctcac 46987086  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 6624839 - 6624774
Alignment:
Q  135 cggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    ||||||||||||| |||| |||||||||||     |||||||||||  |||||||||||||||||||||||    
T  6624839 cggggttcgaaccccggaccttgcatatat-----tatgcattgtccatgccaactgagctaagctcacga 6624774  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 18619069 - 18619029
Alignment:
Q  170 tatgcattgtcactgccaactgagctaagctcacgaaaact 210  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
T  18619069 tatgcattgtctctgccagctgagctaagctcacgagaact 18619029  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 32200443 - 32200510
Alignment:
Q  133 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    ||||||| | ||||| |||| |||||||||||     ||||||||||| ||| ||||||||||||||||||||    
T  32200443 gtcggggcttgaaccccggaccttgcatatat-----tatgcattgtccctgtcaactgagctaagctcacga 32200510  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 37932391 - 37932328
Alignment:
Q  137 gggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    ||||||||||| |||| |||||||||||     |||||||||||  | |||||||||||||||||||||    
T  37932391 gggttcgaaccccggaccttgcatatat-----tatgcattgtccataccaactgagctaagctcacga 37932328  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 11709051 - 11708984
Alignment:
Q  133 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    ||||||||| |||| ||||| |||||||||||     ||||||||||| || |||||||||||||||||||||    
T  11709051 gtcggggtttgaacttcggaccttgcatatat-----tatgcattgtccctaccaactgagctaagctcacga 11708984  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 13575349 - 13575287
Alignment:
Q  138 ggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    ||||||||||||||||||||||||| |     ||||||||||| || ||||||||||||| |||||||    
T  13575349 ggttcgaacctcggaacttgcatatgt-----tatgcattgtccctaccaactgagctaaactcacga 13575287  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 21317366 - 21317405
Alignment:
Q  170 tatgcattgtcactgccaactgagctaagctcacgaaaac 209  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  21317366 tatgcattgtctctaccaactgagctaagctcacgaaaac 21317405  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 19908757 - 19908692
Alignment:
Q  133 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcac 203  Q
    |||||||||||||||||||| |||||||||||     |||||||||||  | ||||||||| |||||||||    
T  19908757 gtcggggttcgaacctcggaccttgcatatat-----tatgcattgtccttaccaactgagttaagctcac 19908692  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 38453327 - 38453263
Alignment:
Q  136 ggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    ||||||||||||  ||| |||||||||||     |||||||||||  |||||||||||||||||||||||    
T  38453327 ggggttcgaaccctggaccttgcatatat-----tatgcattgtccatgccaactgagctaagctcacga 38453263  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 20799394 - 20799457
Alignment:
Q  137 gggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    ||||| ||||| |||| |||||||||||     ||||||||||| || |||||||||||||||||||||    
T  20799394 gggtttgaaccccggaccttgcatatat-----tatgcattgtccctaccaactgagctaagctcacga 20799457  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 22630356 - 22630423
Alignment:
Q  133 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    ||||||||| ||||||| || |||||||||||     |||||||||||||| ||||||||| ||| |||||||    
T  22630356 gtcggggtttgaacctcagaccttgcatatat-----tatgcattgtcactaccaactgagataatctcacga 22630423  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 7484691 - 7484757
Alignment:
Q  138 ggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    |||| |||||||||| ||||||||||| ||  ||||||||||| || ||| |||||||||||||||||    
T  7484691 ggtttgaacctcggaccttgcatatat-atattatgcattgtctctaccagctgagctaagctcacga 7484757  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 21400014 - 21400086
Alignment:
Q  128 gtggtgtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    |||||||| |||||||||||   || |||||||||||     ||||||||||| || |||||||||||||||||||||    
T  21400014 gtggtgtcagggttcgaacccaagaccttgcatatat-----tatgcattgtccctaccaactgagctaagctcacga 21400086  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 47528445 - 47528509
Alignment:
Q  135 cggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacg 204  Q
    |||||||||||||||||| ||||| |||||     |||||||||||  | ||||||||||||||||||||    
T  47528445 cggggttcgaacctcggaccttgcgtatat-----tatgcattgtccttaccaactgagctaagctcacg 47528509  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 17139513 - 17139580
Alignment:
Q  133 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    ||||||||| ||||| |||| |||| ||||||     ||||||||||| || |||||||||||||||||||||    
T  17139513 gtcggggtttgaaccccggaccttgaatatat-----tatgcattgtccctaccaactgagctaagctcacga 17139580  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 34083637 - 34083700
Alignment:
Q  138 ggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctca 202  Q
    |||||||||| |||| ||| ||||||| || |||||||||||| || ||||||||| ||||||||    
T  34083637 ggttcgaaccccggaccttacatatattat-atatgcattgtccctaccaactgagttaagctca 34083700  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 7206188 - 7206123
Alignment:
Q  135 cggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    |||||||  ||||||||| |||||||||||     ||||||||||| || |||||||||||||||||||||    
T  7206188 cggggtttaaacctcggaccttgcatatat-----tatgcattgtctctaccaactgagctaagctcacga 7206123  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 20565074 - 20565138
Alignment:
Q  136 ggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    |||||| ||||| |||| |||||||||||     ||||||||||| || |||||||||||||||||||||    
T  20565074 ggggtttgaaccccggaccttgcatatat-----tatgcattgtccctaccaactgagctaagctcacga 20565138  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 24593437 - 24593366
Alignment:
Q  137 gggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacgaaaacttat 213  Q
    ||||||||||| |||| |||||||||||     |||||||||||  | |||||||||||||||||||| | ||||||    
T  24593437 gggttcgaaccccggaccttgcatatat-----tatgcattgtccttaccaactgagctaagctcacggagacttat 24593366  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 31815883 - 31815950
Alignment:
Q  133 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 205  Q
    ||||||||| ||||| |||| |||||||||||     ||||||||||| || ||||||||| |||||||||||    
T  31815883 gtcggggtttgaaccccggaccttgcatatat-----tatgcattgtccctaccaactgagttaagctcacga 31815950  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 43484693 - 43484729
Alignment:
Q  170 tatgcattgtcactgccaactgagctaagctcacgaa 206  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  43484693 tatgcattgtctctgccaactgagctaagcttacgaa 43484729  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 15869132 - 15869165
Alignment:
Q  171 atgcattgtcactgccaactgagctaagctcacg 204  Q
    ||||| ||||||||||||||||||||||||||||    
T  15869132 atgcaatgtcactgccaactgagctaagctcacg 15869165  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 655747 - 655810
Alignment:
Q  135 cggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcac 203  Q
    ||||||||||||| |||| |||||||||||     |||||||||||  | |||||||||||||||||||    
T  655747 cggggttcgaaccccggaccttgcatatat-----tatgcattgtcgataccaactgagctaagctcac 655810  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 10922304 - 10922375
Alignment:
Q  133 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacgaaaac 209  Q
    ||||||||| ||||| |||| |||||||||||     ||||||||||| || ||||||||| |||||||||| ||||    
T  10922304 gtcggggtttgaaccccggatcttgcatatat-----tatgcattgtccctaccaactgagttaagctcacgcaaac 10922375  T

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