View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5356_low_1 (Length: 460)
Name: NF5356_low_1
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5356_low_1 |
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| [»] scaffold0314 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 32971620 - 32971194
Alignment:
| Q |
11 |
cacagatacggacaccaaacatgatccagacacacaatttgacgaaatgacataattgaacgtaatcacaagtgtcgagaacactatatcggacatcaga |
110 |
Q |
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| T |
32971620 |
cacagatacggacaccaaacatgatccagacaca--atttgacgaaatgacataattgaacataatcacaagtgtcgagaacactatatcggacatcaga |
32971523 |
T |
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| Q |
111 |
catgcattctagcgctacagattcctcacattgtaacaaacagaaacaagcattcaattcaattgcatcacaactcaaacaacaaaaatcctgatcaaac |
210 |
Q |
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| T |
32971522 |
cacgcattctagggctacagattcctcacattgtaacaaacagaaacaagcattcaattcaattgaatcacaactcaaacaacaaaaatcctaatcaaac |
32971423 |
T |
|
| Q |
211 |
tcagatccaattcatttttcactacgaaatcaaatcaatcaaaatttcagaacataacaagaatcataagaaatataaaatgtaccggtggatcagagag |
310 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32971422 |
tcagatccaattcatttttcactacaaaatcaaatcaatcaaaatttcagaacataacaagaatcataagaaatataacatgtaccggtggatcagagag |
32971323 |
T |
|
| Q |
311 |
agaatccgatacaacatcaaaatgcgcgagcaacacagaattaggaataccgctgcggctatctccaccgccaccggcaaacacgaggtactttccggcg |
410 |
Q |
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| T |
32971322 |
agaatccgatacaacatcaaaatgcgcgagcaacacagaattaggaataccgctgcggctatctccaccgccaccggcaaacacgaggtactttccggcg |
32971223 |
T |
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| Q |
411 |
tcaactgcttccgtctccggcgaagattt |
439 |
Q |
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| T |
32971222 |
tcaactgcttccgtctccggcgaagattt |
32971194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0314 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0314
Description:
Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 8969 - 9001
Alignment:
| Q |
55 |
aaatgacataattgaacgtaatcacaagtgtcg |
87 |
Q |
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| T |
8969 |
aaatgacataattcaacgtaatcacaagtgtcg |
9001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 1586620 - 1586660
Alignment:
| Q |
46 |
aatttgacgaaatgacataattgaacgtaatcacaagtgtc |
86 |
Q |
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| T |
1586620 |
aatttgaaaaaatgacataattgaacgtaatcacatgtgtc |
1586660 |
T |
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