View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5356_low_3 (Length: 244)
Name: NF5356_low_3
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5356_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 36724708 - 36724935
Alignment:
| Q |
1 |
tcctttgctggcaaagtttcaagttcctctatttcataaactccataaaactgtggtaaagagtttactttggctcaggctaagctggtgtaaaagggta |
100 |
Q |
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| T |
36724708 |
tcctttgctggcaaagtttcaagttcctctctttcataaactccataaaactgtggtaaagagtttactttggctcgggctaagctggtgtaaaagggta |
36724807 |
T |
|
| Q |
101 |
aagacaaccacgtccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36724808 |
aagacaaccacgtccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcga |
36724907 |
T |
|
| Q |
201 |
gaagaacatgaatatcatcctcataatt |
228 |
Q |
| |
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||||||||||||| ||||||||||||| |
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| T |
36724908 |
gaagaacatgaatgccatcctcataatt |
36724935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 717014 - 716809
Alignment:
| Q |
12 |
caaagtttcaagttcct-ctatttcataaactccataaaactgtggtaaagagtttactttggctcaggctaagctggtgtaaaagggtaaagacaacca |
110 |
Q |
| |
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| T |
717014 |
caaagtttcaagttccttctcttccataaactccataaaaatgttgcaaagagttcactttggctcgagccaagctggtgcagaagggtaaagaccacca |
716915 |
T |
|
| Q |
111 |
cgtccatattataattttggcgtagaatt---ctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaac |
207 |
Q |
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| T |
716914 |
catctatattataattttcgcgaagaattatactaccaattttgtcccataaattcacatcactccaaaccaacacaacattaggacactcgagaagaac |
716815 |
T |
|
| Q |
208 |
atgaat |
213 |
Q |
| |
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|||||| |
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| T |
716814 |
atgaat |
716809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 35 - 206
Target Start/End: Complemental strand, 14540193 - 14540018
Alignment:
| Q |
35 |
cataaactccataaaactgtggtaaagagttt---actttggctcaggctaagctggtgtaaaagggtaaagacaaccacgtccatattataattttggc |
131 |
Q |
| |
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|||||||||||||||||| ||| |||||||| ||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| | |
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| T |
14540193 |
cataaactccataaaactatggcaaagagttgttcacttttgctcagactaagctggtgtagaagggtaaagaccaccacgtccatattataattttgac |
14540094 |
T |
|
| Q |
132 |
gtagaattctatcaa-ttttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaa |
206 |
Q |
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| ||||||||||||| |||| |||| || || || |||||||||||||| ||||| |||||||||||||||||||| |
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| T |
14540093 |
gaagaattctatcaatttttttcccgtagattcatatcatgccaaacctacacaatattaggacactcgagaagaa |
14540018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 36473646 - 36473531
Alignment:
| Q |
113 |
tccatattataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaa |
212 |
Q |
| |
|
|||||||||||||||||| | || | ||||||||| | ||||| |||| |||||| ||||||||||||||||||||||||| || | || ||||||| |
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| T |
36473646 |
tccatattataattttggtgaagtactctatcaatactttcccacaaatttacatcacgccaaacctgcacaacattaggacattccaaaaacacatgaa |
36473547 |
T |
|
| Q |
213 |
tatcatcctcataatt |
228 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
36473546 |
tactatcctcataatt |
36473531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 29094663 - 29094773
Alignment:
| Q |
119 |
ttataattttggcgtagaattctatcaattttgtcccataaatacacatcatgccaaacctgcacaacattaggacactcgagaagaacatgaatatcat |
218 |
Q |
| |
|
|||||||||||||| | || |||| |||||||||||||||| |||||||||||| |||| ||||| |||| ||| || | |||||| ||||||| | |
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| T |
29094663 |
ttataattttggcgcataacgctatttattttgtcccataaattcacatcatgccacgcctgaacaactttagaacattcaataagaacgtgaatattgt |
29094762 |
T |
|
| Q |
219 |
cctcataattg |
229 |
Q |
| |
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| ||||||||| |
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| T |
29094763 |
cttcataattg |
29094773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 12715536 - 12715584
Alignment:
| Q |
113 |
tccatattataattttggcgtagaattctatcaattttgtcccataaat |
161 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||||| |||||||||||| |
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|
| T |
12715536 |
tccatattataatttttgcgaagagttctatcaattgtgtcccataaat |
12715584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 12776767 - 12776815
Alignment:
| Q |
113 |
tccatattataattttggcgtagaattctatcaattttgtcccataaat |
161 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||||| |||||||||||| |
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| T |
12776767 |
tccatattataatttttgcgaagagttctatcaattgtgtcccataaat |
12776815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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