View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5356_low_5 (Length: 238)
Name: NF5356_low_5
Description: NF5356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5356_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 22831490 - 22831693
Alignment:
| Q |
20 |
cagcatctaaccatacaaaaacatggaattctgtagcttacaaaatagtaaatgttgagttagttctaaccctcaaggaaaaggaaaacaaatcgaaaat |
119 |
Q |
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| T |
22831490 |
cagcatctaaccatacaaaaacatggaattctgtagcatacaaaatagtaaatgttgagttagttctaaccctcaaggaaaaggaaaacaaatagaaaat |
22831589 |
T |
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| Q |
120 |
tgtgagaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtcttgtctttttacattcattttctatatctaatcctttgtta |
219 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22831590 |
tgtgagaatataaataaaacgatgcaggaaatcacaattgctaccttcagaactttgtcttgtctttttacattcattttctatatctaatcttttgtta |
22831689 |
T |
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| Q |
220 |
ctgc |
223 |
Q |
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|||| |
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| T |
22831690 |
ctgc |
22831693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 22983689 - 22983847
Alignment:
| Q |
23 |
catctaaccatacaaaaacatggaattctgtagcttacaaaatagtaaatgttgagttagttctaaccctcaaggaaaaggaaaacaaatcga---aaat |
119 |
Q |
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|||||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||| |||||||||||||| | |||| |
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| T |
22983689 |
catctaaccagacaaaaacatggaattctgtagcatgaaaaatggtaaatgttgagttagttttaaccctcaagcaaaaggaaaacaaaaaaaattaaat |
22983788 |
T |
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| Q |
120 |
tgtg-agaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtctt |
180 |
Q |
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| || || ||||||||||||| | || |||||||||||||||||||||||||| |||||| |
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| T |
22983789 |
tctgtagcatataaataaaacaaaac---aaatcacaattgctaccttcagaactgtgtctt |
22983847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 22843847 - 22843950
Alignment:
| Q |
117 |
aattgtgagaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtcttgtctttttacattcattttctatatctaatcctttg |
216 |
Q |
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||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||||| | | ||||||||||||| |||| ||||| | |||| |
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| T |
22843847 |
aattgtgaggatataaataaaacgatactggaaatcataattgctacctacagaactttgtctt-tgtctttacattcatttgctatttctaaacttttg |
22843945 |
T |
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| Q |
217 |
ttact |
221 |
Q |
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||||| |
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| T |
22843946 |
ttact |
22843950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 40945680 - 40945610
Alignment:
| Q |
86 |
taaccctcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaaacgatacaggaaatcacaa |
156 |
Q |
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||||||||||||||||||||||||||| ||| ||| ||||||||| |||||| | | ||| |||||||||| |
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| T |
40945680 |
taaccctcaaggaaaaggaaaacaaatggaagattatgagaatatgaataaacccacacaagaaatcacaa |
40945610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 40958676 - 40958625
Alignment:
| Q |
86 |
taaccctcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaa |
137 |
Q |
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||||||| ||||||||||||| ||||| ||| ||| |||||||||||||||| |
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| T |
40958676 |
taacccttaaggaaaaggaaagcaaatagaagattatgagaatataaataaa |
40958625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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