View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357-Insertion-1 (Length: 923)
Name: NF5357-Insertion-1
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 100 - 524
Target Start/End: Complemental strand, 40893651 - 40893227
Alignment:
| Q |
100 |
tcaacacaatccagactagtgatgaaaagttactaataaattgaacaaatgaaatcaatccgaaagaacagcataataataccactgccactgaggatat |
199 |
Q |
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| T |
40893651 |
tcaacacaatccaaactagtgatgaaaagttactaataaattgaacaaatgaaatcaatccgaaagaacagcataataataccactgccactgaggatat |
40893552 |
T |
|
| Q |
200 |
gtttgagtttccgtttcaaccttctcaaactcggattcgccattgatattgaaccaatatgttgcttctcacaaaacgtgcaataatcagaatgaaggtt |
299 |
Q |
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| T |
40893551 |
gtttgagtttccgtttcaactttctcaaactcggattcgccattgatattgaaccaatatgttgcttctcacaaaacgtgcaataatcagaatgaaggtt |
40893452 |
T |
|
| Q |
300 |
gttagttcgtataatactgcagcacatgaattctaggacttggttgtgaactgaaatgtcccaaaccctgccatcaattgtacttgttttgactatatgg |
399 |
Q |
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| T |
40893451 |
gttagttcgtataatactgcagcacatgaattctaggacttggttgtgaactgaaatgtcccaaaccctgccatcaattgtacttgttttgactatatgg |
40893352 |
T |
|
| Q |
400 |
ctctaatgaaagtcttgttttgtttatttaatgatgattgctttacaacatgtttacgatatcatggtgcatatttctaagaaattaccggcaagcaaag |
499 |
Q |
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| T |
40893351 |
ctctaatgaaagtcttgttttgtttatttaatgattattgctttacaacatgtttacgatatcatggtgcatatttctaagaaattaccggcaagcaaag |
40893252 |
T |
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| Q |
500 |
gtgttattatgccagagtgcatatg |
524 |
Q |
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| T |
40893251 |
gtgttattatgccagagtgcatatg |
40893227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 571 - 923
Target Start/End: Complemental strand, 40893180 - 40892829
Alignment:
| Q |
571 |
actaaacaataggatcaagattacgttccttttttgaagaggtacactaccaccaccttactcttgtatttaggtgtttgtaccattttcatttcattgt |
670 |
Q |
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| T |
40893180 |
actaaacaataggatcaagattacgttccttttttgaagaggtacactaccaccaccttactcttgtatttaggtgtttgtaccattttcatttcattgt |
40893081 |
T |
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| Q |
671 |
aggatgagtcaacagaaaccatatactagcatggttatcaacataaatacaatcttagaagaaggttccggccaattcaagcgactatgatcatcaattt |
770 |
Q |
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| T |
40893080 |
aggatgagtcaacagaaaccatatactagcatggttatcaacataaatacaatcttagaagaaggttccggccaattcaagcgactatgatcatcaattt |
40892981 |
T |
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| Q |
771 |
aaacacaaattcccttccctcaattgtgtcagtgcttaattttttagctcatattattgttgtttgtgtgtgaataacacatgttagggttgagagtgga |
870 |
Q |
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| T |
40892980 |
aaacacaaattcccttccctcaattgtgtcagtgcttaattttttagctcatattattgttgtttgtgtgtgaataacacatgtta-ggttgagagtgga |
40892882 |
T |
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| Q |
871 |
tggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttgg |
923 |
Q |
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| T |
40892881 |
tggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttgg |
40892829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 728 - 923
Target Start/End: Complemental strand, 44144510 - 44144316
Alignment:
| Q |
728 |
gaagaaggttccggccaattcaagcgactatgatcatcaatttaaacacaaattcccttccctcaattgtgtcagtgcttaattttttagctcatattat |
827 |
Q |
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| T |
44144510 |
gaagaaggttccggccaattcaagtaactatgatcatcaatttaatcacaaattcccttccctcaattgtgtcagtgcttgatttttgagctcatattat |
44144411 |
T |
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| Q |
828 |
tgttgtttgtgtgtgaataacacatgttagggttgagagtggatggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttgg |
923 |
Q |
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| T |
44144410 |
tgttgtttgtgtgtgaataacacatgtta-ggttgagagtgtatggaaagcattgcacaatcaccatagtaagaatatttacatatacaagtttgg |
44144316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 44144622 - 44144533
Alignment:
| Q |
645 |
tgtttgtaccattttcatttcattgtaggatgagtcaacagaaaccatatact---agcatggttatcaacataaatacaatcttagaag |
731 |
Q |
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| T |
44144622 |
tgtttctaccattttcatttcattgtaggatgagtcaacagaaaccatatactagcagcatggttatcaacataaatacaatcttagaag |
44144533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 40893756 - 40893700
Alignment:
| Q |
7 |
acccctggccctggggatatactcgagcatggagcagtcctcgaattcatcctctaa |
63 |
Q |
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| T |
40893756 |
acccctggccctggggatatactcgagcatggagcagtcctcgaattcatcctctaa |
40893700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 601 - 651
Target Start/End: Complemental strand, 44144706 - 44144656
Alignment:
| Q |
601 |
tttttgaagaggtacactaccaccaccttactcttgtatttaggtgtttgt |
651 |
Q |
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| T |
44144706 |
tttttgaaggtgtacactaccaccaccttactcttgtatttaggtgtttgt |
44144656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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