View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357-Insertion-10 (Length: 160)
Name: NF5357-Insertion-10
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 19262544 - 19262396
Alignment:
| Q |
11 |
cctacacctataacacctccatctcctgttacgcctgcacctgttacacctcctgcacctgttacaccaactcctgttaagcccgctcctattaagtcta |
110 |
Q |
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| T |
19262544 |
cctacacctataacacctccatctcctgttacgcctgcacccgttacacctcttgctcctgttacaccaactcctgttaagcccgctcctgttaagccta |
19262445 |
T |
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| Q |
111 |
gccctttcacacctaatccagtttccttccaaattcctgttatgcctgt |
159 |
Q |
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| T |
19262444 |
gccctttcacacgtaatccagtttccttccaaatccctgttatgcctgt |
19262396 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 21471869 - 21471921
Alignment:
| Q |
83 |
cctgttaagcccgctcctattaagtctagccctttcacacctaatccagtttc |
135 |
Q |
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| T |
21471869 |
cctgttaagcctgctcctgttaagcctagcccttttacgcctaatccaatttc |
21471921 |
T |
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