View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5357-Insertion-11 (Length: 413)

Name: NF5357-Insertion-11
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5357-Insertion-11
NF5357-Insertion-11
[»] chr2 (7 HSPs)
chr2 (90-333)||(13791816-13792058)
chr2 (8-115)||(13792227-13792334)
chr2 (65-206)||(13792088-13792228)
chr2 (39-115)||(13792417-13792495)
chr2 (49-115)||(28226536-28226601)
chr2 (67-129)||(13792351-13792413)
chr2 (47-120)||(35414351-35414423)
[»] chr7 (4 HSPs)
chr7 (39-120)||(21416350-21416430)
chr7 (47-120)||(23568920-23568993)
chr7 (47-107)||(27597860-27597919)
chr7 (49-87)||(36675753-36675791)
[»] chr4 (5 HSPs)
chr4 (47-120)||(11197103-11197175)
chr4 (50-120)||(12718038-12718107)
chr4 (39-120)||(34946320-34946397)
chr4 (47-120)||(11307496-11307569)
chr4 (53-94)||(10396305-10396346)
[»] chr8 (2 HSPs)
chr8 (47-120)||(3671060-3671132)
chr8 (92-120)||(5981652-5981680)
[»] chr1 (2 HSPs)
chr1 (47-120)||(34666018-34666091)
chr1 (51-120)||(31973544-31973613)
[»] chr3 (3 HSPs)
chr3 (61-120)||(16143327-16143387)
chr3 (49-117)||(32201200-32201269)
chr3 (50-120)||(40196030-40196099)
[»] chr6 (2 HSPs)
chr6 (15-120)||(7301509-7301614)
chr6 (47-112)||(11637938-11638003)
[»] chr5 (3 HSPs)
chr5 (50-115)||(36389205-36389269)
chr5 (52-111)||(13112875-13112933)
chr5 (52-93)||(13042879-13042920)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 90 - 333
Target Start/End: Complemental strand, 13792058 - 13791816
Alignment:
Q  90 ggggggagtgggagcgggatcctagtgtggaaatcaagtgtgagcagttatatgtaatttgattaattaaacatgctgatgctaatgtaagcaatctaat 189  Q
    ||||||||||| |||||||||||| |||||||||||||||||| ||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||    
T  13792058 ggggggagtggaagcgggatcctaatgtggaaatcaagtgtgaacagttgtatgcaatttgattaat-aaacatgatgatgctaatgtaagcaatctaat 13791960  T
Q  190 tatttttgttaaaacgtgtggaagtacatgaggtgcctcataaaaattgtacataaggtgtcatattaagcgcaagagtttgatatcgaaatctcaatag 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13791959 tatttttgttaaaacgtgtggaagtacatgaggtgcctcataaaaactgtacatgaggtgtcatattaagcgcaagagtttgatatcgaaatctcaatag 13791860  T
Q  290 acatagttcaatttttttggggaaaatctaattcaatctaatac 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13791859 acatagttcaatttttttggggaaaatctaattcaatctaatac 13791816  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 13792334 - 13792227
Alignment:
Q  8 cttagtgggtcatagacgtttaaccccttgccgcttcctagactccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcggg 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13792334 cttagtgggtcctagacgtttaaccccttgccgcttcctagactccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcggg 13792235  T
Q  108 atcctagt 115  Q
    ||||||||    
T  13792234 atcctagt 13792227  T

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Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 13792228 - 13792088
Alignment:
Q  65 gtatcagagcctagttaggcttgctggggggagtgggagcgggatcctagtgtggaaatcaa-gtgtgagcagttatatgtaatttgattaattaaacat 163  Q
    |||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  13792228 gtattagatcctagttaagcttgctggggggag-gggagcgggatcctagtgtggaaatcaaagtgtgagcagttctatgtaatttgattaat-aaacat 13792131  T
Q  164 gctgatgctaatgtaagcaatctaattatttttgttaaaacgt 206  Q
    | |||| ||||||||||||||||||||||||||||||||||||    
T  13792130 gttgattctaatgtaagcaatctaattatttttgttaaaacgt 13792088  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 13792495 - 13792417
Alignment:
Q  39 cgcttcctagactcccc-aacaaactggtatcagagcctagttaggcttgct-ggggggagtgggagcgggatcctagt 115  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  13792495 cgctccctagactcccccaacaaactggtatcagagcctagttaggcttgctaggggggagtggaagcgggatcttagt 13792417  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 28226536 - 28226601
Alignment:
Q  49 actccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcctagt 115  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  28226536 actccccaacaaactggtatcagagcctagttagacttgct-gggagagtgggagcgggatcctagt 28226601  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 13792413 - 13792351
Alignment:
Q  67 atcagagcctagttaggcttgctggggggagtgggagcgggatcctagtgtggaaatcaagtg 129  Q
    |||||| | |||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  13792413 atcagatcttagttaagcttgctggggggagtggtagcgggatcctagtgtggaaatcaagtg 13792351  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 35414423 - 35414351
Alignment:
Q  47 agactccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    ||||||||||| ||  ||||||||||| || ||||||||||||   ||||||| || |||||||||||||||||    
T  35414423 agactccccaataatttggtatcagagtcttgttaggcttgct-aagggagtgtgaacgggatcctagtgtgga 35414351  T

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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 21416430 - 21416350
Alignment:
Q  39 cgcttcctagactccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21416430 cgcttcccagactccccaacaaattggtatcagagcctagttaggcttgctg-ggggagtgggagcgggatcctagtgtgga 21416350  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 23568993 - 23568920
Alignment:
Q  47 agactccccaacaaactggtatcagagcctagttaggc-ttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||| |||||||||||||||    
T  23568993 agactccccaacaaactggtatcatagcctggttaggctttgct-gggggagtgggagcaggatcctagtgtgga 23568920  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 27597860 - 27597919
Alignment:
Q  47 agactccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcggg 107  Q
    ||||||||||| ||||||||||||||||||  ||||||||||| |||||||||||||||||    
T  27597860 agactccccaataaactggtatcagagcctgattaggcttgct-gggggagtgggagcggg 27597919  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 36675753 - 36675791
Alignment:
Q  49 actccccaacaaactggtatcagagcctagttaggcttg 87  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  36675753 actccccaagaaactagtatcagagcctagttaggcttg 36675791  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 11197103 - 11197175
Alignment:
Q  47 agactccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  11197103 agactcccaaacaaactggtatcagagcctagttaggcttgct-gggggagtgggagcgggatcctggtgtgga 11197175  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 12718107 - 12718038
Alignment:
Q  50 ctccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    |||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||| |||||||||| ||||    
T  12718107 ctccccaataaattggtattagagcctagttaggcttgctg-ggggagtgggagcaggatcctagtatgga 12718038  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 34946397 - 34946320
Alignment:
Q  39 cgcttcctagactccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    |||||| |||||||||||||||   ||||||||||||| |||||| ||||| ||||||||||||  |||||| |||| ||||    
T  34946397 cgcttcgtagactccccaacaa---ggtatcagagcctggttaggtttgct-gggggagtgggactgggatcatagtttgga 34946320  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 11307569 - 11307496
Alignment:
Q  47 agactccccaacaaactggtatcagagc-ctagttaggcttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    |||||||||||||||||||||||| ||| || |||||||||| | ||||| | ||||| ||| ||||||||||||    
T  11307569 agactccccaacaaactggtatcatagctctggttaggcttgat-gggggtgcgggagtgggttcctagtgtgga 11307496  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 10396305 - 10396346
Alignment:
Q  53 cccaacaaactggtatcagagcctagttaggcttgctggggg 94  Q
    ||||||||||||| || ||||||||||||||||| |||||||    
T  10396305 cccaacaaactggcattagagcctagttaggctttctggggg 10396346  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 3671132 - 3671060
Alignment:
Q  47 agactccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    ||||||||||||||| ||||||||||| || | ||||||||||| |||||||||||||||||||||||||||||    
T  3671132 agactccccaacaaattggtatcagagtctggctaggcttgctg-ggggagtgggagcgggatcctagtgtgga 3671060  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 5981680 - 5981652
Alignment:
Q  92 ggggagtgggagcgggatcctagtgtgga 120  Q
    |||||||||||||||||||||||||||||    
T  5981680 ggggagtgggagcgggatcctagtgtgga 5981652  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 34666091 - 34666018
Alignment:
Q  47 agactccccaacaaactggtatcagag-cctagttaggcttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||||||| | ||||||||||||||||||||||||    
T  34666091 agactccccaacaaactggtatcagagtcctggttaggctcgctggggtg-gtgggagcgggatcctagtgtgga 34666018  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 31973613 - 31973544
Alignment:
Q  51 tccccaacaaactggtatcagagcctag-ttaggcttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    ||||||||||| |||||||| ||||| | ||||||| | ||| || |||||||||||||||||||||||||    
T  31973613 tccccaacaaattggtatcaaagccttggttaggctcgatggagg-agtgggagcgggatcctagtgtgga 31973544  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 16143327 - 16143387
Alignment:
Q  61 actggtatcagagcctagttaggcttgctgg-ggggagtgggagcgggatcctagtgtgga 120  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||    
T  16143327 actggtatcagagcctggttaggcttgctggacgggagtgggagcgggattctagtgtgga 16143387  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 32201200 - 32201269
Alignment:
Q  49 actccccaacaaactggtatcagagcc-tagttaggcttgctggggggagtgggagcgggatcctagtgt 117  Q
    ||||||||||||||||||||||||||| | ||| ||||   | |||| ||||||||||||||||||||||    
T  32201200 actccccaacaaactggtatcagagccctggttgggctccattggggaagtgggagcgggatcctagtgt 32201269  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 40196099 - 40196030
Alignment:
Q  50 ctccccaacaaactggtatcagagc-ctagttaggcttgctggggggagtgggagcgggatcctagtgtgga 120  Q
    ||||||||||| ||||||||||||| || |||||||||| |||||  || ||||||||||||||||||||||    
T  40196099 ctccccaacaa-ctggtatcagagctctggttaggcttggtggggt-agcgggagcgggatcctagtgtgga 40196030  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 7301614 - 7301509
Alignment:
Q  15 ggtcatagacgtttaaccccttgccgcttcctagactccccaacaaactggtatcagagcc-tagttaggcttgctggggggagtgggagcgggatccta 113  Q
    |||| |||| ||||| ||| ||| |||| || | ||||||||||||||| ||||||||||| | |||||||| | |||||| ||||||||||||||||||    
T  7301614 ggtcctagaggtttagcccattgtcgctccccaaactccccaacaaactagtatcagagccatggttaggctcgatggggg-agtgggagcgggatccta 7301516  T
Q  114 gtgtgga 120  Q
     ||||||    
T  7301515 atgtgga 7301509  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 11638003 - 11637938
Alignment:
Q  47 agactccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcct 112  Q
    ||||||||||| |||| |||||||||||||  ||||||||| ||||||||||| ||| ||||||||    
T  11638003 agactccccaagaaacaggtatcagagcctgattaggcttgttggggggagtgagagtgggatcct 11637938  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 36389269 - 36389205
Alignment:
Q  50 ctccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcctagt 115  Q
    |||| |||||||||||||||||| | || |||||||||||| ||||||||||||||| ||||||||    
T  36389269 ctcctcaacaaactggtatcagaacataattaggcttgctg-ggggagtgggagcggaatcctagt 36389205  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 13112875 - 13112933
Alignment:
Q  52 ccccaacaaactggtatcagagcctagttaggcttgctggggggagtgggagcgggatcc 111  Q
    |||||||||||||||||||||||||  ||||||||||| |||| |||| |||||||||||    
T  13112875 ccccaacaaactggtatcagagccttcttaggcttgct-ggggaagtgagagcgggatcc 13112933  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 13042879 - 13042920
Alignment:
Q  52 ccccaacaaactggtatcagagcctagttaggcttgctgggg 93  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  13042879 ccccaacaaactggtatcagagccttcttaggcttgctgggg 13042920  T

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