View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357-Insertion-4 (Length: 723)
Name: NF5357-Insertion-4
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 8 - 645
Target Start/End: Complemental strand, 35702206 - 35701569
Alignment:
| Q |
8 |
gggatatgattgtcaagtaccgagcttcagctggtgcagtaaactataatgcacaagagagcaaataacagtcctcttttattgatatgattgagatggt |
107 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35702206 |
gggatatgattgtcaagtaccgagctgcagctggtgcagtaaaatataatgcacaagagagcaaataacagtcctcttttattgatatgattgagatggt |
35702107 |
T |
|
| Q |
108 |
gttagcaatgtgctaagaaaataagtctggaaaaaagcatagatactaaaccacataatctagtggggggtagaaaaatgaatagggtcttgatcatggt |
207 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35702106 |
gttagcaatgtgctaagaaaataagtctgggaaaaagcatagatactaaaccacataatctagtggggg-tagaaaaatgaatagggtcttgatcatggt |
35702008 |
T |
|
| Q |
208 |
tgataaatgatcttttgttttctgatcaatccttgtgtgtaaatacgttttgttttatttttaaaagcccttgtgtgtaaatataatttcatattatgta |
307 |
Q |
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| T |
35702007 |
tgataaatgatcttttgttttctgatcaatccttgtgtgtaaatacattttgttttatttttaaaagcccttgtgtgtaaatataatttcatattatgta |
35701908 |
T |
|
| Q |
308 |
atcgtttgtacagactatttggcttgttaattatgcacgttagatatatcatggtagtttaatggttgtattctcattaccttcgaaatgatattctgaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35701907 |
atcgtttgtacagactatttggcttgttaattatgcacgttagatatatcatggtagtttaatggttgtattctcattaccttcgaaatgatattctgaa |
35701808 |
T |
|
| Q |
408 |
atttattccccaattctacacttcatgtaatgctttttctggttttgtttactgaaacatgaattttactgtaaaagaaaaatatattcaatacatttgc |
507 |
Q |
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| T |
35701807 |
atttattccccaattctacacttcatgtaatgctttttctggttttgtttactgaaacatgaattttactgtaaaagaaaaatatattcaatacatttgc |
35701708 |
T |
|
| Q |
508 |
tctgtacagtatacaatccattaatcgcactaatatagaacattacttcttcatcaatctacttcagcccccaaaccattattatatctcccgac-aaaa |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
35701707 |
tctgtacagtatacaatccattaatcgcactaatatagaacattacttctttatcaatctacttcagctcccaaaccattattatatctcccgacaaaaa |
35701608 |
T |
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| Q |
607 |
tgatttgctataacgatatattgagtattattgattatc |
645 |
Q |
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| T |
35701607 |
tgatttgctataacgatatatagagtattattgattatc |
35701569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 7e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 150 - 371
Target Start/End: Original strand, 41109106 - 41109330
Alignment:
| Q |
150 |
atactaaaccacataatctagtggggggtagaaaaatgaatagggtcttgatcatggttgataaatgatcttttgttttctgatcaatccttgtgtgtaa |
249 |
Q |
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||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| |
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| T |
41109106 |
atactgaagcacataatctagtgggg-gtagaaaaatgaatagggtcttgatcatggttgataaatgatcttttgttttatgatcaacccttgtgagtaa |
41109204 |
T |
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| Q |
250 |
atacgttttgttttatttttaaaagcccttgtgtgtaaata----taatttcatattatgtaatcgtttgtacagactatttggcttgttaattatgcac |
345 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |
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| T |
41109205 |
atacattttgttttatttttaaaagcccttgtgtgtaaatataattaatttcatattatgtaatcatttgtaccgactatttggctcgttaattatgcac |
41109304 |
T |
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| Q |
346 |
gttagatatatcatggtagtttaatg |
371 |
Q |
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| T |
41109305 |
gttagatatatcatggtagtttaatg |
41109330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 41108820 - 41108950
Alignment:
| Q |
10 |
gatatgattgtcaagtaccgagcttcagctggtgcagtaaactataatgcacaagagagcaaataaca--gtcctcttttattgatatgattgagatggt |
107 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
41108820 |
gatatgattgtcaagcaccgagctgcagctggtgcagtaaactataatgcataagagagcaaataacagtgtcctcttttattgctatgattgagatggt |
41108919 |
T |
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| Q |
108 |
gttagcaatgtgctaagaaaataagtctgga |
138 |
Q |
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|||| ||||||||||||||||| |||||||| |
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| T |
41108920 |
gttaacaatgtgctaagaaaatgagtctgga |
41108950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 485 - 571
Target Start/End: Original strand, 41109394 - 41109480
Alignment:
| Q |
485 |
aaaaatatattcaatacatttgctctgtacagtatacaatccattaatcgcactaatatagaacattacttcttcatcaatctactt |
571 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||| | ||||| |||| |||||||||||||| |||||||||||| |
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| T |
41109394 |
aaaaaaatattcaatacatttgctttgtacagtatacaatccattagttgcacttatatcgaacattacttctttatcaatctactt |
41109480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 394 - 460
Target Start/End: Original strand, 41109327 - 41109393
Alignment:
| Q |
394 |
aatgatattctgaaatttattccccaattctacacttcatgtaatgctttttctggttttgtttact |
460 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |
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| T |
41109327 |
aatgatattctgaaatttattccccaattctacacctcgtgtaatgctttgtctggttttgtttact |
41109393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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