View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5357-Insertion-5 (Length: 633)

Name: NF5357-Insertion-5
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5357-Insertion-5
NF5357-Insertion-5
[»] chr5 (1 HSPs)
chr5 (8-633)||(35354454-35355079)


Alignment Details
Target: chr5 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 8 - 633
Target Start/End: Original strand, 35354454 - 35355079
Alignment:
Q  8 atatgcacaaaggtcttgttgcatgaagattgggtcctgacttttctgctagggtggagtgctattcaagggaaacctgcgagggcaagcttctaaaagt 107  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35354454 atatgcacaaaggtcttgttgcatgaagattgggtcccgatttttctgctagggtggagtgctattcaagggaaacctgcgagggcaagcttctaaaagt 35354553  T
Q  108 tatgataagatatcaaagagattgcaagtatgccatatttctgtttcatttcttaagtgtgtttttgagtttttccatgttgaaataacttctgaactag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35354554 tatgataagatatcaaagagattgcaagtatgccatatttctgtttcatttcttaagtgtgtttttgagtttttccatgttgaaataacttctgaactag 35354653  T
Q  208 atatttgcataacatttgttataggatacatttggagatgaatacaggcttttccttctagtcaatcctgaggatgataagccagtggccgttgtcgttc 307  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35354654 atatttgcataacatttgttataggataaatttggagatgaatacaggcttttccttctagtcaatcctgaggatgataagccagtggccgttgtcgttc 35354753  T
Q  308 caagaactactttacaaccagagacgactcgtacttacttaactccttcaaaattgtggatcattgtgttgnnnnnnnnnnnnagaaaatagtgatgctt 407  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||    
T  35354754 caagaactactttacaaccagagacaactcgtacttacttaactccttcaaaattgtggatcattgtgttcttttttatttttagaaaatagtgatgctt 35354853  T
Q  408 atggttgtacttatgctattacttttcttttttagctgtacctgagtggtttggtgctgcgtcttttggaatcgtcacagtgtttaccttactgcttcgc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35354854 atggttgtacttatgctattacttttcttttttagctgtacctgagtggtttggtgctgcgtcttttggaatcgtcacagtgtttaccttactgcttcgc 35354953  T
Q  508 aatgtccccaatttgcaatccgatttattgtgagcatttttcttgcaccttttcttgtcacttcatactccattatctcttaggggaagtgtattgccct 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35354954 aatgtccccaatttgcaatccgatttattgtgagcatttttcttgtaccttttcttgtcacttcatactccattatctcttaggggaagtgtattgccct 35355053  T
Q  608 acaaaacattgtcatgtggttttgtt 633  Q
    ||||||||||||||||||||||||||    
T  35355054 acaaaacattgtcatgtggttttgtt 35355079  T

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