View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357-Insertion-9 (Length: 425)
Name: NF5357-Insertion-9
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357-Insertion-9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 47198219 - 47197802
Alignment:
| Q |
8 |
ggaagacctgtacataattaaacataataaaaattcatgtatttggtttaatattttaacattgattcggctgcattatgcattaaaatgattcattatt |
107 |
Q |
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| T |
47198219 |
ggaagacctgtacataattaaacataataaaaatttatgtatttggtttaatattttaacattgattcgactgcattatgcattaaaatgattcatgatt |
47198120 |
T |
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| Q |
108 |
aataattaatgctattataattattgagtagtgacctgcatacagatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaagggac |
207 |
Q |
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| T |
47198119 |
aataattaatgctattatagttattgagtagtgacctgcatacagatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaagggac |
47198020 |
T |
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| Q |
208 |
tcttaacctcattagccactttactagctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttcccttt |
307 |
Q |
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| T |
47198019 |
tcttaacctcattagccactttactagctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttgtaagaacggctttcccttt |
47197920 |
T |
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| Q |
308 |
ctcctcgaaacccctttcaatgagactgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgat |
407 |
Q |
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| T |
47197919 |
ctcctcgaaacccctttcaatgagactgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgat |
47197820 |
T |
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| Q |
408 |
aatctccacccatatcca |
425 |
Q |
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| T |
47197819 |
actctccacccatatcca |
47197802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 134 - 425
Target Start/End: Complemental strand, 47185211 - 47184920
Alignment:
| Q |
134 |
agtagtgacctgcatacagatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaagggactcttaacctcattagccactttacta |
233 |
Q |
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| T |
47185211 |
agtagttacctgcatacatatggcaattatcaaaggagggagattgtgggacttaacaagatccttgaaggggctcttgacctcattagccactttacta |
47185112 |
T |
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| Q |
234 |
gctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccctttctcctcgaaacccctttcaatgagac |
333 |
Q |
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| T |
47185111 |
gctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccctttctcctcgaaacccctttcaatgagac |
47185012 |
T |
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| Q |
334 |
tgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgataatctccacccatatcca |
425 |
Q |
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| T |
47185011 |
tgttgggagtatcatccactatgagagaccccactgtaagcataactgctggaatgattgctccggccaatgatattctccacccatatcca |
47184920 |
T |
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