View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5357_high_8 (Length: 302)

Name: NF5357_high_8
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5357_high_8
NF5357_high_8
[»] chr4 (39 HSPs)
chr4 (1-273)||(52138479-52138771)
chr4 (105-279)||(26496121-26496293)
chr4 (127-273)||(27850770-27850915)
chr4 (204-290)||(56085468-56085554)
chr4 (105-290)||(1519932-1520115)
chr4 (204-290)||(19750203-19750289)
chr4 (204-290)||(19789517-19789603)
chr4 (204-290)||(44498582-44498668)
chr4 (204-273)||(2312389-2312458)
chr4 (210-273)||(11968650-11968713)
chr4 (210-290)||(4871614-4871695)
chr4 (204-273)||(52240016-52240085)
chr4 (125-290)||(26629912-26630074)
chr4 (105-181)||(34326955-34327031)
chr4 (204-287)||(13165619-13165702)
chr4 (204-269)||(7707732-7707797)
chr4 (222-287)||(40723351-40723416)
chr4 (112-165)||(42810021-42810074)
chr4 (125-165)||(6349380-6349420)
chr4 (105-165)||(40723469-40723529)
chr4 (123-163)||(45535291-45535331)
chr4 (204-287)||(6348278-6348361)
chr4 (204-271)||(28590813-28590880)
chr4 (125-179)||(4871723-4871777)
chr4 (225-278)||(7708719-7708772)
chr4 (205-273)||(15449984-15450052)
chr4 (123-163)||(23103838-23103878)
chr4 (204-292)||(36845529-36845617)
chr4 (204-272)||(49896493-49896561)
chr4 (204-271)||(1794553-1794620)
chr4 (105-163)||(54485429-54485487)
chr4 (205-279)||(34326859-34326933)
chr4 (105-166)||(49343815-49343877)
chr4 (236-290)||(52963689-52963743)
chr4 (105-163)||(54484487-54484545)
chr4 (225-278)||(1829886-1829939)
chr4 (209-290)||(22069356-22069437)
chr4 (204-249)||(23103918-23103962)
chr4 (131-163)||(38555115-38555147)
[»] chr8 (31 HSPs)
chr8 (1-279)||(9854563-9854863)
chr8 (204-290)||(10669354-10669440)
chr8 (204-290)||(24192572-24192658)
chr8 (204-267)||(13117541-13117604)
chr8 (204-290)||(42877739-42877824)
chr8 (204-273)||(32798440-32798509)
chr8 (206-290)||(17455168-17455252)
chr8 (105-192)||(42871033-42871120)
chr8 (204-290)||(20180583-20180669)
chr8 (204-273)||(32695182-32695251)
chr8 (204-269)||(42098706-42098771)
chr8 (110-290)||(31845612-31845789)
chr8 (204-287)||(8571525-8571608)
chr8 (204-287)||(14840808-14840891)
chr8 (204-287)||(43202220-43202303)
chr8 (225-290)||(42872120-42872185)
chr8 (204-264)||(40437505-40437565)
chr8 (23-70)||(22551452-22551499)
chr8 (204-278)||(30786810-30786884)
chr8 (204-290)||(37400909-37400987)
chr8 (225-290)||(42100037-42100102)
chr8 (204-273)||(44076270-44076339)
chr8 (125-181)||(28420078-28420134)
chr8 (225-273)||(42362680-42362728)
chr8 (204-287)||(2421205-2421288)
chr8 (204-287)||(22551130-22551213)
chr8 (105-163)||(28418980-28419038)
chr8 (225-290)||(24305163-24305228)
chr8 (222-271)||(42878757-42878806)
chr8 (204-273)||(45281097-45281166)
chr8 (236-292)||(38696948-38697004)
[»] chr7 (29 HSPs)
chr7 (105-279)||(39981449-39981620)
chr7 (105-279)||(41328351-41328522)
chr7 (204-290)||(35295820-35295906)
chr7 (124-290)||(16755992-16756155)
chr7 (204-273)||(43460731-43460800)
chr7 (204-290)||(669298-669383)
chr7 (204-290)||(2414866-2414952)
chr7 (204-271)||(32255131-32255198)
chr7 (204-290)||(44372850-44372936)
chr7 (204-290)||(44381706-44381792)
chr7 (207-272)||(22336119-22336184)
chr7 (204-287)||(46201255-46201338)
chr7 (204-273)||(40811459-40811528)
chr7 (204-268)||(22537703-22537767)
chr7 (207-278)||(30334554-30334624)
chr7 (207-273)||(13564150-13564216)
chr7 (204-290)||(43441467-43441553)
chr7 (204-273)||(11502329-11502398)
chr7 (225-290)||(41079766-41079831)
chr7 (222-290)||(15992256-15992324)
chr7 (242-290)||(32256343-32256391)
chr7 (225-273)||(47456313-47456361)
chr7 (105-192)||(47059330-47059417)
chr7 (105-192)||(47060287-47060374)
chr7 (105-166)||(4298959-4299021)
chr7 (236-278)||(6173393-6173435)
chr7 (210-287)||(11344628-11344705)
chr7 (225-290)||(11501300-11501365)
chr7 (225-289)||(40812544-40812608)
[»] chr2 (18 HSPs)
chr2 (105-279)||(4920871-4921042)
chr2 (105-279)||(28611065-28611236)
chr2 (204-273)||(29219525-29219594)
chr2 (204-273)||(29332824-29332893)
chr2 (204-271)||(32469290-32469357)
chr2 (204-273)||(18616913-18616982)
chr2 (210-287)||(43033205-43033282)
chr2 (204-273)||(17459393-17459462)
chr2 (204-273)||(42641769-42641838)
chr2 (205-273)||(11317277-11317345)
chr2 (225-281)||(43034400-43034456)
chr2 (204-275)||(8320893-8320964)
chr2 (204-249)||(35903669-35903714)
chr2 (204-271)||(1085296-1085363)
chr2 (105-163)||(13030198-13030256)
chr2 (204-286)||(34513462-34513544)
chr2 (125-163)||(43034311-43034349)
chr2 (204-273)||(6030378-6030447)
[»] chr1 (38 HSPs)
chr1 (105-279)||(51445722-51445894)
chr1 (105-279)||(14478398-14478571)
chr1 (105-290)||(48527655-48527838)
chr1 (212-287)||(9226132-9226207)
chr1 (124-282)||(52077975-52078131)
chr1 (204-267)||(15232897-15232960)
chr1 (212-290)||(13147333-13147411)
chr1 (205-271)||(16965035-16965101)
chr1 (210-290)||(10722291-10722371)
chr1 (215-290)||(3617417-3617492)
chr1 (105-290)||(5612896-5613079)
chr1 (110-290)||(13894735-13894913)
chr1 (110-166)||(15743479-15743535)
chr1 (204-273)||(45584916-45584985)
chr1 (222-287)||(48096959-48097024)
chr1 (210-290)||(10711909-10711989)
chr1 (105-184)||(14477600-14477680)
chr1 (105-165)||(48096845-48096905)
chr1 (236-287)||(23091476-23091527)
chr1 (105-290)||(26286533-26286716)
chr1 (204-263)||(49801766-49801825)
chr1 (204-290)||(12665912-12665997)
chr1 (125-163)||(27556515-27556553)
chr1 (204-290)||(44999371-44999457)
chr1 (204-278)||(46110414-46110488)
chr1 (124-165)||(3616722-3616763)
chr1 (226-287)||(15746697-15746758)
chr1 (112-165)||(41872821-41872874)
chr1 (206-278)||(27814425-27814497)
chr1 (125-165)||(34350373-34350413)
chr1 (225-273)||(46111426-46111474)
chr1 (204-279)||(6049334-6049409)
chr1 (212-290)||(15072707-15072785)
chr1 (212-273)||(9485221-9485282)
chr1 (204-249)||(46318527-46318572)
chr1 (222-290)||(9482577-9482644)
chr1 (204-288)||(18821648-18821732)
chr1 (131-175)||(50442839-50442883)
[»] chr3 (31 HSPs)
chr3 (105-290)||(13621040-13621224)
chr3 (105-279)||(49379834-49380006)
chr3 (204-290)||(10301055-10301141)
chr3 (204-292)||(14745109-14745197)
chr3 (105-181)||(21074091-21074167)
chr3 (204-271)||(3208625-3208692)
chr3 (204-273)||(38242424-38242493)
chr3 (210-290)||(48083348-48083428)
chr3 (204-290)||(10338859-10338945)
chr3 (204-290)||(53194521-53194607)
chr3 (110-163)||(54110101-54110154)
chr3 (204-268)||(26886416-26886480)
chr3 (215-271)||(35371048-35371104)
chr3 (123-163)||(44602873-44602913)
chr3 (204-271)||(27841618-27841685)
chr3 (105-191)||(50810718-50810804)
chr3 (105-191)||(50865060-50865146)
chr3 (204-287)||(53420441-53420524)
chr3 (125-163)||(24487151-24487189)
chr3 (204-273)||(10732037-10732106)
chr3 (112-165)||(23443275-23443328)
chr3 (105-181)||(50809577-50809653)
chr3 (105-181)||(50866209-50866285)
chr3 (205-273)||(34819194-34819262)
chr3 (204-271)||(41264561-41264628)
chr3 (236-290)||(26887497-26887551)
chr3 (207-273)||(53614184-53614250)
chr3 (222-271)||(3455551-3455600)
chr3 (225-290)||(40244306-40244371)
chr3 (204-276)||(12107888-12107959)
chr3 (211-287)||(28909523-28909599)
[»] chr6 (11 HSPs)
chr6 (105-279)||(11722918-11723091)
chr6 (204-290)||(11967337-11967423)
chr6 (204-273)||(7311633-7311702)
chr6 (204-273)||(17837755-17837824)
chr6 (204-268)||(23392358-23392422)
chr6 (212-287)||(15728854-15728929)
chr6 (228-290)||(12669844-12669906)
chr6 (105-181)||(232330-232406)
chr6 (204-273)||(5187530-5187599)
chr6 (204-269)||(29381638-29381703)
chr6 (204-268)||(18346658-18346722)
[»] chr5 (19 HSPs)
chr5 (105-290)||(1102739-1102922)
chr5 (204-290)||(8521375-8521460)
chr5 (204-273)||(27705224-27705293)
chr5 (204-273)||(30859079-30859148)
chr5 (204-272)||(11262532-11262600)
chr5 (204-290)||(9220366-9220455)
chr5 (208-290)||(10735884-10735966)
chr5 (204-290)||(36898890-36898976)
chr5 (204-269)||(30910885-30910950)
chr5 (204-273)||(39603993-39604062)
chr5 (204-290)||(1010275-1010360)
chr5 (204-273)||(22047872-22047941)
chr5 (225-290)||(30912093-30912158)
chr5 (204-290)||(4127162-4127248)
chr5 (225-278)||(324172-324225)
chr5 (222-271)||(1009325-1009374)
chr5 (204-278)||(325095-325169)
chr5 (204-290)||(9169707-9169792)
chr5 (131-163)||(223471-223503)
[»] scaffold0077 (1 HSPs)
scaffold0077 (204-273)||(54092-54161)
[»] scaffold0118 (1 HSPs)
scaffold0118 (204-273)||(43482-43551)
[»] scaffold0034 (2 HSPs)
scaffold0034 (204-271)||(108654-108721)
scaffold0034 (204-290)||(109655-109741)
[»] scaffold0011 (2 HSPs)
scaffold0011 (207-290)||(127554-127637)
scaffold0011 (105-163)||(127679-127737)
[»] scaffold0013 (1 HSPs)
scaffold0013 (204-290)||(32691-32779)
[»] scaffold0219 (1 HSPs)
scaffold0219 (204-287)||(8100-8182)
[»] scaffold0031 (1 HSPs)
scaffold0031 (227-287)||(124092-124152)
[»] scaffold2071 (1 HSPs)
scaffold2071 (204-292)||(590-678)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 52138479 - 52138771
Alignment:
Q  1 tggaattgttgcagaattgttgttgttttgattttgaaaatggtgttgaattggtgcagaattga-tttttattttattctataaatgttagtgaaaatg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  52138479 tggaattgttgcagaattgttgttgttttgattttgaaaatggtgttgaattggtgtagaattgattttttattttattctataaatgttagtgaaaatg 52138578  T
Q  100 g-------------------caataagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaat 180  Q
    |                    || |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| ||||    
T  52138579 gtatgaagatgaagaagagtgaagaagaagatgaagaaaagaagaattaattagttgttattgactcaccgtaagataaaatacacatgcgtaatccaat 52138678  T
Q  181 gatcttccttttnnnnnnnnnnntcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
     | | |||||||           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  52138679 aaccctccttttaaaaaaaaaaatcaaacggtttaaattagaataattaataggatctatggtggaccattcttaaagttggtctaccataga 52138771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 279
Target Start/End: Original strand, 26496121 - 26496293
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | |||| ||||||  ||||||||||||||||||||||||||||||| |  ||||| |||||| | || ||||           |    
T  26496121 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgtgtaatccaatgaccctcattttaaaaaaata--t 26496218  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  26496219 caaacggtttaaattagaataattaataggatctatggtggaccatttttaaagtcggtccaccatagacatttg 26496293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 273
Target Start/End: Original strand, 27850770 - 27850915
Alignment:
Q  127 ttaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnntcaaacggtttaaattagaataa 226  Q
    |||||| |||||||||||| ||||||||||||||||| |||| || | | |||||||| ||||||            ||||||||||||||||| |||||    
T  27850770 ttaattggttgttgttgacacaccgtaagataaaatagatatgcgca-tccaatgatcctcctttaaaaaaaaagaatcaaacggtttaaattaaaataa 27850868  T
Q  227 ttaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  27850869 ttaataggatctatggtggaccacttttaaggttggtccaccataga 27850915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 56085554 - 56085468
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| | |||| ||| |||||||||||| ||||| ||||||||||    
T  56085554 tcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttagtccaccatagacatttggggttaaagtt 56085468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 290
Target Start/End: Complemental strand, 1520115 - 1519932
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | |||  ||||||| ||||||||| ||||||||||||||||||||  ||||||||  |||| || |||||||           |    
T  1520115 aagaagatgaagaaagggagacataattaggtgttgttgattcaccgtaagataaaatacacttacgtaatctaatggtcatccttttaaaaatataa-t 1520017  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||||| |||||||||||||||||||| |||| ||  ||||||| || || |||||| | ||||| ||||||||||    
T  1520016 caaacggtttaaattaaaataattaataggatctatggtggatca-ctttaaaggtgatctaccataaacatttggggttaaagtt 1519932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 19750203 - 19750289
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||| | ||||||  || |||||||||||| |||| |||||||||||    
T  19750203 tcaaacgatttaaattaaaataattaataggatctatggtggacaacttttaagatttgtccaccatagacatttaaggttaaagtt 19750289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 19789603 - 19789517
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||| | ||||||  || |||||||||||| |||| |||||||||||    
T  19789603 tcaaacgatttaaattaaaataattaataggatctatggtggacaacttttaagatttgtccaccatagacatttaaggttaaagtt 19789517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 44498668 - 44498582
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||| | |||| |||| ||||||||||| |||| | |||||||||    
T  44498668 tcaaacggttttaattaaaataattaataggatctatggtggaccactcttaaggttgatccaccatagacatttaaagttaaagtt 44498582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 2312389 - 2312458
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||| ||||||  |||||||||||||||    
T  2312389 tcaaacagtttaaattaaaataattaataggatctatggtggaccacttttaagattggtccaccataga 2312458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 11968713 - 11968650
Alignment:
Q  210 ggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||| ||||||||| ||||||    
T  11968713 ggtttaaattaaaataattaataggatctatgatggaccactcttaaggttggtccatcataga 11968650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 4871695 - 4871614
Alignment:
Q  210 ggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttga-ggttaaagtt 290  Q
    ||||||||||| |||||||||||||||||| | ||||||| | || | |||||||||||||||| |||||| ||||||||||    
T  4871695 ggtttaaattaaaataattaataggatctacggtggaccactctttaggttggtccaccatagacatttgagggttaaagtt 4871614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 52240085 - 52240016
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| ||  |||||||||||||||| ||||||| | |||| ||||||||||||||||    
T  52240085 tcaaacggtttaaattaaaaatattaataggatctatggtggaccactcttaaggttggtccaccataga 52240016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 290
Target Start/End: Complemental strand, 26630074 - 26629912
Alignment:
Q  125 aattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnntcaaacggtttaaattagaat 224  Q
    ||||||||| |||||||||||| ||||||||||||||||||  ||||||||  |||| || ||||||            |||||| ||||| |||| |||    
T  26630074 aattaattacttgttgttgacttaccgtaagataaaatacacctacgtaatctaatggtcatccttt--aaaaaaaagatcaaacagtttacattaaaat 26629977  T
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| ||||| ||||||| | || |||||||| ||||||| | ||||| ||||||||||    
T  26629976 aattaataggacctatggtggaccactctt-aagttggttcaccataaacatttggggttaaagtt 26629912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 34327031 - 34326955
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatg 181  Q
    ||||||||||||||||  | ||||||||||||||| | |||||| ||||||||||||||||  | ||||||||||||    
T  34327031 aagatgatgaagaaaaagaaaattaattagttgttatcgactcatcgtaagataaaatacacttgcgtaattcaatg 34326955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 13165702 - 13165619
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    ||||||||||||||||| ||||||||||    |||||| ||||||| | |||| |||||||||||||||| |||||| ||||||    
T  13165702 tcaaacggtttaaattaaaataattaatgaagtctatggtggaccactcttaaggttggtccaccatagaaatttgaagttaaa 13165619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 7707797 - 7707732
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccacca 269  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| | |||| ||||||| ||||    
T  7707797 tcaaacggttgaaattaaaataattaataggatctatggtggaccactcttaaggttggtctacca 7707732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 40723416 - 40723351
Alignment:
Q  222 aataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||||||||||||||||| | ||||| | |||| |||||||||||||| | |||||||||||||    
T  40723416 aataattaataggatctatggtagaccactcttaaggttggtccaccatatacatttgaggttaaa 40723351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 42810021 - 42810074
Alignment:
Q  112 tgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaataca 165  Q
    |||||||| | |||| ||||||| ||||||||||||||||||||||||||||||    
T  42810021 tgaagaaagggagaaataattagatgttgttgactcaccgtaagataaaataca 42810074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 6349380 - 6349420
Alignment:
Q  125 aattaattagttgttgttgactcaccgtaagataaaataca 165  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  6349380 aattaattagttgttgttgactcaccataagataaaataca 6349420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 40723529 - 40723469
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaataca 165  Q
    |||| |||||||||||  | ||||||||||||||| | |||||||||||||||||||||||    
T  40723529 aagaagatgaagaaaaagaaaattaattagttgttatcgactcaccgtaagataaaataca 40723469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 45535331 - 45535291
Alignment:
Q  123 agaattaattagttgttgttgactcaccgtaagataaaata 163  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  45535331 agaattaattagttgttgttgactcactgtaagataaaata 45535291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 6348361 - 6348278
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    ||||| |||| |||||||||  ||||||| | |||| | ||||||| | |||| |||||||||||||||| |||||||||||||    
T  6348361 tcaaagggttaaaattagaaatattaataaggtctacggtggaccactcttaaggttggtccaccatagacatttgaggttaaa 6348278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 28590813 - 28590880
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    |||||| ||||| |||| ||||||||||||||||||||||| | || | ||||||||||| |||||||    
T  28590813 tcaaacagtttatattaaaataattaataggatctatgatgaatcactcttaaagttggttcaccata 28590880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 4871777 - 4871723
Alignment:
Q  125 aattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaa 179  Q
    ||||||||||||| ||||||||||||||| ||||||||||| ||  |||||||||    
T  4871777 aattaattagttgatgttgactcaccgtatgataaaatacacatgtgtaattcaa 4871723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 7708719 - 7708772
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatattt 278  Q
    |||||||| | ||||||||| |||| |||||| |||||||||||||||||||||    
T  7708719 aattaataaggtctatgatgtaccacttttaaggttggtccaccatagatattt 7708772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 15449984 - 15450052
Alignment:
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||| |||||||||| ||  |||||||||||||||| ||||||| | |||| |||||||||| |||||    
T  15449984 caaacagtttaaattaaaaatattaataggatctatggtggaccactcttaaggttggtccacgataga 15450052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 23103838 - 23103878
Alignment:
Q  123 agaattaattagttgttgttgactcaccgtaagataaaata 163  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  23103838 agaattaatgagttgttgttgactcactgtaagataaaata 23103878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 292
Target Start/End: Complemental strand, 36845617 - 36845529
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagttga 292  Q
    |||||| ||||| |||| |||||||||||||| ||||| ||||||| | |||| ||||||| | |||| | ||||  ||||||||||||    
T  36845617 tcaaacagtttacattaaaataattaataggacctatggtggaccactcttaatgttggtctatcataaacatttagggttaaagttga 36845529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 49896493 - 49896561
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatag 272  Q
    ||||||||||||||||| ||||||||| ||||||||   ||||||| | || | |||||||||||||||    
T  49896493 tcaaacggtttaaattaaaataattaacaggatctacagtggaccactctttaggttggtccaccatag 49896561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 1794620 - 1794553
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    ||||||||||||||||| || | |||||| | |||||| ||||||| | |||| ||||||||||||||    
T  1794620 tcaaacggtttaaattaaaaaatttaataaggtctatggtggaccactcttaaggttggtccaccata 1794553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 54485429 - 54485487
Alignment:
Q  105 aagatgatgaagaaaagaagaa-ttaattagttgttgttgactcaccgtaagataaaata 163  Q
    |||| |||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||    
T  54485429 aagaagatgaagaaa-gaagaaattaattagatgttgttgactcaccgtaagatagaata 54485487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 279
Target Start/End: Complemental strand, 34326933 - 34326859
Alignment:
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    |||||| || |||||  |||||||||||||||||||  | ||||| | ||||||||||||||||||  |||||||    
T  34326933 caaacgattaaaatttaaataattaataggatctatagtagaccactcttaaagttggtccaccatgtatatttg 34326859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 49343815 - 49343877
Alignment:
Q  105 aagatgatgaagaaaaga-agaattaattagttgttgttgactcaccgtaagataaaatacat 166  Q
    |||| ||||||||||||  |||| ||||||| ||||||| ||||||| |||||||||||||||    
T  49343815 aagaagatgaagaaaagggagaaataattaggtgttgtttactcaccataagataaaatacat 49343877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 52963743 - 52963689
Alignment:
Q  236 tctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||| |||||| | |||||||||||||| |||||  |||||||||    
T  52963743 tctatgatggaccacttttaaggctggtccaccatagacatttggagttaaagtt 52963689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 54484545 - 54484487
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaata 163  Q
    |||| ||||||||||  || |||||||||| |||||||| |||||||||||||| ||||    
T  54484545 aagaagatgaagaaagaaaaaattaattagatgttgttggctcaccgtaagatagaata 54484487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 1829939 - 1829886
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatattt 278  Q
    |||||||| | |||| ||||||||| ||||||||||||||||| ||||| ||||    
T  1829939 aattaataaggtctacgatggaccacttttaaagttggtccacgatagacattt 1829886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 22069437 - 22069356
Alignment:
Q  209 cggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||| ||||||| ||  ||||||||  |||||| || |||| |||||| ||| |||||||||||| |||||| |||||||||    
T  22069437 cggtataaattaaaaatattaatagagtctatggtgaaccacttttaaggttcgtccaccatagacatttgaagttaaagtt 22069356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 23103918 - 23103962
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggacca 249  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||    
T  23103918 tcaaacggtttaaattaaaa-aattaataggatctatggtggacca 23103962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 38555115 - 38555147
Alignment:
Q  131 ttagttgttgttgactcaccgtaagataaaata 163  Q
    |||| ||||||||||||||||||||||||||||    
T  38555115 ttagatgttgttgactcaccgtaagataaaata 38555147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 9854563 - 9854863
Alignment:
Q  1 tggaattgttgcagaattgttgttgttttgattttgaaaatggtgttgaattggtgcagaattga-tttttattttattctataaatgttagtgaaaatg 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |||    
T  9854563 tggaattgttgcagaatagttgttgttttgattttgaaaatggtgttgaattggtgcagaattgattttttattttattttatgaatgttagtgaagatg 9854662  T
Q  100 gcaataagatgatgaagaa-----aagaaga-----------------attaattagttgttgttgactcaccgtaagataaaatacatatacgtaattc 177  Q
    | |  ||||||||||||||     |||||||                 |||||||||||||||||||||||||||||||||||| ||| || |||||| |    
T  9854663 gtatgaagatgatgaagaagagtgaagaagaagataaagaaaaggaggattaattagttgttgttgactcaccgtaagataaaacacacatgcgtaatcc 9854762  T
Q  178 aatgatcttccttttnnnnnnnnnnntcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatt 277  Q
    ||||| | | |||||           ||||| |||||||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||| |||    
T  9854763 aatgacccttctttt-aaaaaaaaaatcaaatggtttaaattagaagaattaataggatctatggtggaccactcttaaagttggtccaccatagacatt 9854861  T
Q  278 tg 279  Q
    ||    
T  9854862 tg 9854863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 10669354 - 10669440
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||| |||||||||||| |||| ||||||||||||||| ||||||| | |||| |||||| ||||||||| ||||||||||||||||    
T  10669354 tcaatcggtttaaattaaaatatttaataggatctatggtggaccactcttaaggttggttcaccatagacatttgaggttaaagtt 10669440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 24192572 - 24192658
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||| | |||| |||||||||||||||| ||||  ||||||||||    
T  24192572 tcaaacggttttaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccatagacatttagggttaaagtt 24192658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 13117541 - 13117604
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccac 267  Q
    |||||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  13117541 tcaaacggttgatattaaaataattaataggatctatgatggaccacttttaaagttggtccac 13117604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 42877824 - 42877739
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||| |||| |||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||| | ||||| ||||||||||    
T  42877824 tcaaagggttgaaatta-aataattaataggatctatggtggaccattcttaaggttggtccaccatacacatttggggttaaagtt 42877739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 32798440 - 32798509
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| | |||| |||| |||||||||||    
T  32798440 tcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttgatccaccataga 32798509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 17455252 - 17455168
Alignment:
Q  206 aaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||| |||||| ||||||||||| |||||||| ||||||| ||||||  |||||| | ||||||||||||| |||||||||    
T  17455252 aaacggttcaaattaaaataattaataagatctatggtggaccacttttaagattggtctagcatagatatttgaagttaaagtt 17455168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 42871120 - 42871033
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttcctttt 192  Q
    |||| |||||||||| | |||| ||||||| |||||||||||| | ||||||||||||||| || |||||||||||| || |||||||    
T  42871120 aagaagatgaagaaagggagaaataattaggtgttgttgactcgcggtaagataaaatacacatgcgtaattcaatggtcatcctttt 42871033  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 20180583 - 20180669
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||| | |||| ||| |||||| ||||| ||||  ||||||||||    
T  20180583 tcaaacggttttaattaaaataattaataggatctatggtggaccactcttaatgttagtccactatagacatttagggttaaagtt 20180669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 32695182 - 32695251
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| | ||||  ||||| |||||||||    
T  32695182 tcaaacggtttaaattaaaataattaataggatctatggtggaccaatcttaagattggttcaccataga 32695251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 42098771 - 42098706
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccacca 269  Q
    |||||||||| |||||| | |||||||||||||||||| ||||||| |||||| ||||||||||||    
T  42098771 tcaaacggttgaaattaaagtaattaataggatctatggtggaccacttttaaggttggtccacca 42098706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 290
Target Start/End: Original strand, 31845612 - 31845789
Alignment:
Q  110 gatgaagaaa-agaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnntcaaa 208  Q
    |||||||||| |||||| |||||||  ||||||||||| ||||||||||||||||||  ||||||||  |||| || ||||||            |||||    
T  31845612 gatgaagaaagagaaga-ttaattacctgttgttgacttaccgtaagataaaatacacctacgtaatctaatggtcatccttt--aaaaaaaagatcaaa 31845708  T
Q  209 cggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    | ||||| |||| |||||||||||||| ||||| ||||||| | || |||||||| ||||||||| ||||| ||||||||||    
T  31845709 cagtttacattaaaataattaataggacctatggtggaccactctt-aagttggttcaccatagacatttggggttaaagtt 31845789  T

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Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 8571525 - 8571608
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||| |||||||||| ||   |||||| | | |||| ||||||||||||||||||||||||||||||| ||||| |||||||    
T  8571525 tcaaacagtttaaattaaaaagtttaataaggtatatggtggaccatttttaaagttggtccaccatagacatttggggttaaa 8571608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 14840808 - 14840891
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    ||||||||||||||||| || | |||||| || ||||| |||| || |||||| |||||||||||||||| ||||| |||||||    
T  14840808 tcaaacggtttaaattaaaaaatttaataagaactatggtggatcacttttaatgttggtccaccatagacatttgtggttaaa 14840891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 43202303 - 43202220
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||| |||||||||  ||||| |||||||||||||| ||||||| | |||| |||| ||||| ||||||||||| |||||||    
T  43202303 tcaaacagtttaaatttaaataactaataggatctatggtggaccactcttaaggttgatccactatagatatttggggttaaa 43202220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 42872120 - 42872185
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||||||||| | ||||| | |||| ||||||| |||||||| ||||||||||||||||    
T  42872120 aattaataggatctatggtagaccactcttaaggttggtctaccatagacatttgaggttaaagtt 42872185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 40437505 - 40437565
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtc 264  Q
    |||||| |||||||||| |||||||||||||||||| | ||||||| |||||| |||||||    
T  40437505 tcaaacagtttaaattaaaataattaataggatctacggtggaccacttttaaggttggtc 40437565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 22551499 - 22551452
Alignment:
Q  23 ttgttttgattttgaaaatggtgttgaattggtgcagaattgattttt 70  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||    
T  22551499 ttgttttgattttgaaaatgctattgaattggtgcataattgattttt 22551452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 30786884 - 30786810
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatattt 278  Q
    |||||||||| ||||||  | |||||||| | | |||||||||||| ||||||||||| ||||||||||| ||||    
T  30786884 tcaaacggttaaaattaacaaaattaataaggtttatgatggaccacttttaaagttgatccaccatagacattt 30786810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 37400987 - 37400909
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||| |||| || ||||||||||||||||| ||||||        ||| ||| ||||||||||||||||||||||||||    
T  37400987 tcaaacggtttatattaaaaaaattaataggatctatggtggacc--------agtgggttcaccatagatatttgaggttaaagtt 37400909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 42100037 - 42100102
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||| | |||| ||||||||| |||||| |||||||||||| ||| |||||| |||||||||    
T  42100037 aattaataaggtctacgatggaccacttttaaggttggtccaccaaagacatttgaagttaaagtt 42100102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 44076270 - 44076339
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||| ||||||||||| || |||||||| ||| |||| |||| ||||||||| |||| |||||||||||    
T  44076270 tcaaatggtttaaattaaaaaaattaataagatttatggtggatcatttttaatgttgttccaccataga 44076339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 28420078 - 28420134
Alignment:
Q  125 aattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatg 181  Q
    |||||||||| ||||||||| |||||||||||||||||| | || |||||| |||||    
T  28420078 aattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatg 28420134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 42362680 - 42362728
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||||||||||||||||| |||| | |||| ||||||||||||||||    
T  42362680 aattaataggatctatgatgaaccactcttaatgttggtccaccataga 42362728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 2421205 - 2421288
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||||||| ||| || || | |||||| | ||||||||||||||| | |||||||||| |||| |||| |||| ||||||||    
T  2421205 tcaaacggttaaaaataaaagatttaataaggtctatgatggaccatctataaagttggttcaccttagacatttaaggttaaa 2421288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 22551213 - 22551130
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    ||||||||||||||||| || | |||||| | | |||| |||| || |||||| ||| |||||||||||| ||||| |||||||    
T  22551213 tcaaacggtttaaattacaaaatttaataaggtttatggtggatcacttttaaggtttgtccaccatagagatttggggttaaa 22551130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 28419038 - 28418980
Alignment:
Q  105 aagatgatgaagaaa-agaagaattaattagttgttgttgactcaccgtaagataaaata 163  Q
    |||| |||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||    
T  28419038 aagaagatgaagaaagagaa-aattaattagatgttgttgattcaccgtaagataaaata 28418980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 24305228 - 24305163
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||||||| ||| || || | |||| |||||||||||||||| ||||  ||||||||||    
T  24305228 aattaataggatctaagatagatcactcttaatgttggtccaccatagacatttagggttaaagtt 24305163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 42878757 - 42878806
Alignment:
Q  222 aataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    |||||||||||||||||||| |||||||   |||| ||||||||||||||    
T  42878757 aataattaataggatctatggtggaccacacttaaggttggtccaccata 42878806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 45281097 - 45281166
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| ||  ||||||||||| |||| | ||||| | |||| ||||||||||| ||||    
T  45281097 tcaaacggtttaaattaaaaatattaataggatttatggtagaccactcttaaggttggtccaccgtaga 45281166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 38696948 - 38697004
Alignment:
Q  236 tctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagttga 292  Q
    |||||| ||||| || | ||| |||||||||| ||||| ||||||||||||||||||    
T  38696948 tctatggtggactatctataatgttggtccacaatagaaatttgaggttaaagttga 38697004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 105 - 279
Target Start/End: Complemental strand, 39981620 - 39981449
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||||| |  ||||||           |    
T  39981620 aagaagatgaagaaagggagaattagttagttgttgttgactcaccgtaagataaaatacacatgcgtaatccaatgaccccccttttacaaaaaa---t 39981524  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  39981523 caaacggtttaaattagaataattaattggatctatggtggaccatttttaaagttggtccaccatagacatttg 39981449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 105 - 279
Target Start/End: Complemental strand, 41328522 - 41328351
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| || ||| ||||||  ||||||||||||||||||||||||||||||||| |||||| ||| || | |||||||           |    
T  41328522 aagaagatgaagaaagga-gaaataattaagtgttgttgactcaccgtaagataaaatacatatgcgtaatccaacgaccctccttttaaaaaaata--t 41328426  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  41328425 caaacggtttaaattagaataattaataggatctatggtggaccatttttaaagttgttccaccatagacatttg 41328351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 35295906 - 35295820
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| | |||| |||||||||||| ||||||||| ||||||||||    
T  35295906 tcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccacagatatttggggttaaagtt 35295820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 290
Target Start/End: Complemental strand, 16756155 - 16755992
Alignment:
Q  124 gaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnntcaaacggtttaaattagaa 223  Q
    |||||||||||||||||||||||||| |||||||||||||||  | ||||||  |||| || |||||||           ||||| |||| |||||| ||    
T  16756155 gaattaattagttgttgttgactcactgtaagataaaatacacttgcgtaatctaatggtcctccttttaaaaaaaa---tcaaatggttaaaattaaaa 16756059  T
Q  224 taattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||||||| | ||| | |||||| |||| | ||||||||| ||||||||||||||||    
T  16756058 taattaataggatctatggtagacaacttttaaggttgtttcaccatagacatttgaggttaaagtt 16755992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 43460731 - 43460800
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  43460731 tcaaagggtttaaattaaaataattaataggatctatggtggaccactcttaaagttggtccaccataga 43460800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 669298 - 669383
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||||||  | ||||||||||||||||| ||||||| | || ||| |||||||||||||| ||||||||||||||||    
T  669298 tcaaacggtttaaattaacaaaattaataggatctatggtggaccactctt-aagatggtccaccatagacatttgaggttaaagtt 669383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 2414952 - 2414866
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||||||  | ||||||||||||||||| ||||||| |||||| |||||||||  ||||| ||||| ||||||||||    
T  2414952 tcaaacggtttaaattaagaaaattaataggatctatggtggaccacttttaaggttggtccattatagacatttggggttaaagtt 2414866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 32255198 - 32255131
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| | |||| ||||||||||||||    
T  32255198 tcaaacggttgaaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccata 32255131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 44372936 - 44372850
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||| | |||| ||| |||||| ||||| ||||  ||||||||||    
T  44372936 tcaaacggttttaattaaaataattaataggatctatggtggaccactcttaatgttagtccactatagacatttagggttaaagtt 44372850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 44381792 - 44381706
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||| | |||| ||| |||||| ||||| ||||  ||||||||||    
T  44381792 tcaaacggttttaattaaaataattaataggatctatggtggaccactcttaatgttagtccactatagacatttagggttaaagtt 44381706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 22336184 - 22336119
Alignment:
Q  207 aacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatag 272  Q
    ||||||| |||||| |||||||||||||||||||| ||||||| |||||| |||| ||||||||||    
T  22336184 aacggttgaaattaaaataattaataggatctatggtggaccacttttaaggttgatccaccatag 22336119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 46201338 - 46201255
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||| ||||| |||| ||||||||||| |||||||| ||||||| | |||| |||||| ||||||||| ||||| |||||||    
T  46201338 tcaaacagtttatattaaaataattaatatgatctatggtggaccactcttaaggttggttcaccatagacatttggggttaaa 46201255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 40811528 - 40811459
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| ||  |||||||| ||||||| ||||||| | |||| ||||||||||||||||    
T  40811528 tcaaacggtttaaattaaaaatattaatagaatctatggtggaccactcttaaggttggtccaccataga 40811459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 22537767 - 22537703
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccacc 268  Q
    ||||||||||||||||| |||||||||||||||||||| |||| || | |||| |||||| ||||    
T  22537767 tcaaacggtttaaattaaaataattaataggatctatggtggatcactattaaggttggttcacc 22537703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 30334554 - 30334624
Alignment:
Q  207 aacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatattt 278  Q
    |||||||||||||| || ||||||||||||||||| |||||  || ||||||||||||| ||||||| ||||    
T  30334554 aacggtttaaattaaaa-aattaataggatctatggtggactgttcttaaagttggtcctccatagacattt 30334624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 13564150 - 13564216
Alignment:
Q  207 aacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||| |||||| |||||||||||||||||||| ||||||| | |||| | || |||||||||||    
T  13564150 aacggttcaaattaaaataattaataggatctatggtggaccactcttaaggatgatccaccataga 13564216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 43441553 - 43441467
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||| ||||| |||| ||||||||||||||  |||| ||||||| | |||| |||||| ||||||||| ||||  ||||||||||    
T  43441553 tcaaacagtttacattaaaataattaataggacttatggtggaccactcttaaggttggtacaccatagacatttagggttaaagtt 43441467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 11502329 - 11502398
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||||| | |||||| |||||||| ||||||||||| ||||||| | |||| ||||||| ||||||||    
T  11502329 tcaaacggctgaaattaaaataattactaggatctatggtggaccactcttaaggttggtctaccataga 11502398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 41079766 - 41079831
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||| | |||| ||||||||| |||||| |||| |||||||||||||||||  |||||||||    
T  41079766 aattaataaggtctacgatggaccacttttaatgttgttccaccatagatatttggagttaaagtt 41079831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 15992324 - 15992256
Alignment:
Q  222 aataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||||||||| || |  | || | |||| |||||||||||||||| ||||||||||||||||    
T  15992324 aataattaataggatctttggtaaatcactcttaaggttggtccaccatagacatttgaggttaaagtt 15992256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 32256343 - 32256391
Alignment:
Q  242 atggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||| |||||| |||||||||||||||| |||||| |||||||||    
T  32256343 atggaccacttttaatgttggtccaccatagacatttgaagttaaagtt 32256391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 47456313 - 47456361
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||||| | |||||||||||||| ||||||||||| |||||||||||    
T  47456313 aattaataaggtctatgatggaccacttttaaagttgttccaccataga 47456361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 47059417 - 47059330
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttcctttt 192  Q
    |||| ||||||||||   |||| |||| || |||| ||||||||| ||||||||||||||| || |||||| ||||| || |||||||    
T  47059417 aagaagatgaagaaagagagaaataatcaggtgttattgactcactgtaagataaaatacacatgcgtaatccaatggtcatcctttt 47059330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 47060287 - 47060374
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttcctttt 192  Q
    |||| ||| |||||| | |||| ||||||| |||||||||| |||| ||||||||||||||  |  ||||||||||| || |||||||    
T  47060287 aagaagataaagaaagggagaaataattaggtgttgttgacacaccataagataaaatacacttgtgtaattcaatggtcatcctttt 47060374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 4299021 - 4298959
Alignment:
Q  105 aagatgatgaagaaaaga-agaattaattagttgttgttgactcaccgtaagataaaatacat 166  Q
    |||| ||||||||||||  |||| ||||||| ||||||| ||||||| |||||||||||||||    
T  4299021 aagaagatgaagaaaagggagaaataattaggtgttgtttactcaccataagataaaatacat 4298959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 6173393 - 6173435
Alignment:
Q  236 tctatgatggaccatttttaaagttggtccaccatagatattt 278  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||    
T  6173393 tctacgatggaccacttttaaagttggtccactatagatattt 6173435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 11344705 - 11344628
Alignment:
Q  210 ggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    ||||||||||| |  |||||||||| | |||| || || || | ||| ||||| ||||||||||||||||||||||||    
T  11344705 ggtttaaattaaagaaattaatagggtatatggtgcactatctataatgttggaccaccatagatatttgaggttaaa 11344628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 11501365 - 11501300
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||| | ||||  ||| |||| |||||| |||||||||||||||| |||||| |||||||||    
T  11501365 aattaataaggtctacaatgaaccacttttaaggttggtccaccatagacatttgaagttaaagtt 11501300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 40812544 - 40812608
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagt 289  Q
    |||||||| |||||| |||||| || |||||| ||||||||||||| | ||||||  ||||||||    
T  40812544 aattaataagatctacgatggatcacttttaaggttggtccaccatggttatttggagttaaagt 40812608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 105 - 279
Target Start/End: Original strand, 4920871 - 4921042
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||  | |||||| |||||||| |||||||           |    
T  4920871 aagaagatgaaaaaagggagaattaattagttgttgttgactcaccgtaagataaaatacacctgcgtaatccaatgatcctccttttaaaaaaaa---t 4920967  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||    
T  4920968 caaacggtttaaattagaataattaataggatttatggtggaccatttttaaagttggtctaccatagacatttg 4921042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 279
Target Start/End: Original strand, 28611065 - 28611236
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | |||| ||||||  ||||||||||||||| ||||||||||||||  | ||||||||||||| | |||||||           |    
T  28611065 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccataagataaaatacacctgcgtaattcaatgaccctccttttaaaaaaaaa--t 28611162  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||||||||||| ||||||||||||| |||||    
T  28611163 caaacggtttaaatta-aataattaataggatctatagtggaccatttttaaagtcggtccaccatagacatttg 28611236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 29219594 - 29219525
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| ||||||  |||||||||||||||    
T  29219594 tcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaagattggtccaccataga 29219525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 29332893 - 29332824
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| ||||||  |||||||||||||||    
T  29332893 tcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaagattggtccaccataga 29332824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 32469357 - 32469290
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    ||||| ||||||||||| |||||||||||||||||||  ||||||| | |||||||||||||||||||    
T  32469357 tcaaagggtttaaattaaaataattaataggatctatagtggaccactcttaaagttggtccaccata 32469290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 18616913 - 18616982
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| ||||||   ||||||||||||||    
T  18616913 tcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaagactggtccaccataga 18616982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 43033282 - 43033205
Alignment:
Q  210 ggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    ||||||||||| ||||||||||||| | |||| ||||||| | |||| ||||||| |||||||| |||||||||||||    
T  43033282 ggtttaaattaaaataattaatagggtttatggtggaccactcttaaggttggtctaccatagacatttgaggttaaa 43033205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 17459462 - 17459393
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| |||||||||||||||||||| | || || ||||||  || ||||||||||||    
T  17459462 tcaaacggtttaaattataataattaataggatctatgttagatcacttttaagattcgtccaccataga 17459393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 42641769 - 42641838
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||| |||||||||| |||||||||||||||||||| | ||||| | |||| ||||| ||||||||||    
T  42641769 tcaaacagtttaaattaaaataattaataggatctatggtagaccactcttaaggttggcccaccataga 42641838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 11317277 - 11317345
Alignment:
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||| ||||||||| |||||||||||||||||||| | ||||| | |||| ||||||| ||||||||    
T  11317277 caaacgatttaaattaaaataattaataggatctatggtagaccactcttaaggttggtctaccataga 11317345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 43034400 - 43034456
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgag 281  Q
    ||||||||||||||||| ||||||| | ||||||||| ||||||||||| |||||||    
T  43034400 aattaataggatctatggtggaccactcttaaagttgatccaccatagacatttgag 43034456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 8320964 - 8320893
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagata 275  Q
    ||||||||||||||||| |||||||||||  ||||||| ||||||  | |||| | ||||||||||||||||    
T  8320964 tcaaacggtttaaattaaaataattaatataatctatggtggaccgctcttaaggatggtccaccatagata 8320893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 35903714 - 35903669
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggacca 249  Q
    ||||||||||||||||| |||| ||||||||||||||| |||||||    
T  35903714 tcaaacggtttaaattaaaatatttaataggatctatggtggacca 35903669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 1085296 - 1085363
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    |||||||||  |||||| |||||||||||||||||||| || |||| | |||||| || |||||||||    
T  1085296 tcaaacggtcgaaattaaaataattaataggatctatggtgtaccactcttaaagatgatccaccata 1085363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 13030198 - 13030256
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaata 163  Q
    |||| |||||||||| | | ||||||||||||||||| ||||||  |||||||||||||    
T  13030198 aagaagatgaagaaagggaaaattaattagttgttgtagactcaatgtaagataaaata 13030256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 34513462 - 34513544
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaa 286  Q
    ||||||||||||||||| || |||||||| | |||||| |||| || | |||| ||||||| |||||| | ||||| ||||||    
T  34513462 tcaaacggtttaaattaaaaaaattaataaggtctatggtggatcactcttaaggttggtcaaccatatacatttggggttaa 34513544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 43034311 - 43034349
Alignment:
Q  125 aattaattagttgttgttgactcaccgtaagataaaata 163  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  43034311 aattaattagttgttgttgacataccgtaagataaaata 43034349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 6030378 - 6030447
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| ||  |||||||||||||||| | || || | |||| ||||||||||| ||||    
T  6030378 tcaaacggtttaaattaaaaatattaataggatctatggtagatcactcttaaggttggtccaccgtaga 6030447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 105 - 279
Target Start/End: Complemental strand, 51445894 - 51445722
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||  | |||||| |||||| | |||| ||           |    
T  51445894 aagaagatgaagaaagggagaattaattagttgttgttgactcaccgtaagataaaatacacctgcgtaatccaatgaccctcctgtttaaaaaaaa--t 51445797  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  51445796 caaacggtttaaattagaataattaataggatctatggtggaccatttttaaagttgatccaccatagacatttg 51445722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 279
Target Start/End: Complemental strand, 14478571 - 14478398
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | |||| ||||||  ||||||||||||||||||||||||||||||  | ||||||||||||| | |||||||           |    
T  14478571 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacacctgcgtaattcaatgaccctccttttaaaaaaaaaa-t 14478473  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  14478472 caaacggtttaaattagaataattaataggatctatggtggaccatttttaaagtcggtccaccatagacatttg 14478398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 290
Target Start/End: Complemental strand, 48527838 - 48527655
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||  | | |||| ||||| || || |||            |    
T  48527838 aagaagatgaagaaaagaaaaattaattagttgttattgactcaccggaagataaaatacacttgcataatccaatggtcatcattt--aaaaaaaagat 48527741  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||| |||||||||| ||||||| ||| |||||||| ||||||| | |||||||||||| |||||||| |||||  |||||||||    
T  48527740 caaacagtttaaattaaaataattgataagatctatggtggaccactcttaaagttggtcgaccatagacatttggagttaaagtt 48527655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 9226132 - 9226207
Alignment:
Q  212 tttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    ||||||||| |||||||||||||||||||| ||||||| |||||| |||| ||||||||||| |||||||||||||    
T  9226132 tttaaattaaaataattaataggatctatggtggaccacttttaaggttgatccaccatagacatttgaggttaaa 9226207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 282
Target Start/End: Original strand, 52077975 - 52078131
Alignment:
Q  124 gaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnntcaaacggtttaaattagaa 223  Q
    ||||||||||||||||||||||||||  ||||||||||||||  ||||||||  |||| || |||||||           |||||||||| |||||| ||    
T  52077975 gaattaattagttgttgttgactcactataagataaaatacacttacgtaatctaatggtcctcctttttaaaaaaaa--tcaaacggttaaaattaaaa 52078072  T
Q  224 taattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgagg 282  Q
    |||||||||||||||||| || | || | |||| |||||| ||||||||| ||||||||    
T  52078073 taattaataggatctatggtgtatcactcttaaggttggttcaccatagacatttgagg 52078131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 15232960 - 15232897
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccac 267  Q
    |||||||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  15232960 tcaaacggttgatattaaaataattaataggatctatgatggaccacttttaaagttggtccac 15232897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 13147333 - 13147411
Alignment:
Q  212 tttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||| |||||||||||||||||||| ||||||| | |||| |||||||||||||||| ||||| | ||||||||    
T  13147333 tttaaattaaaataattaataggatctatggtggaccactattaaggttggtccaccatagacatttgggattaaagtt 13147411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 16965035 - 16965101
Alignment:
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||| | |||||||||||||||||||    
T  16965035 caaacggttgaaattaaaataattaataggatctatggtggaccactcttaaagttggtccaccata 16965101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 10722291 - 10722371
Alignment:
Q  210 ggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| || ||||| ||| ||||||||||||||| | || | ||||||||| |||||||||||||||||||||||    
T  10722291 ggtttaaattaaaaaaattagtagaatctatgatggaccactctttaggttggtccatcatagatatttgaggttaaagtt 10722371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 3617417 - 3617492
Alignment:
Q  215 aaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||| |||||||||||||||||||  ||||||| | |||| |||||| ||||||||| ||||||||||||||||    
T  3617417 aaattaaaataattaataggatctatagtggaccactcttaaggttggttcaccatagacatttgaggttaaagtt 3617492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 290
Target Start/End: Original strand, 5612896 - 5613079
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | |||  ||||||  ||||||||| ||||| ||||||||||||||  ||||||||  |||| || |||||||           |    
T  5612896 aagaagatgaagaaagggagacataattaagtgttgttgattcaccataagataaaatacacttacgtaatctaatggtcatccttttaaaaatataa-t 5612994  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||||| |||||||||||||||||||| |||| ||  ||||||| || ||||||||| | ||||| ||||||||||    
T  5612995 caaacggtttaaattaaaataattaataggatctatggtggatca-ctttaaaggtgatccaccataaacatttggggttaaagtt 5613079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 290
Target Start/End: Complemental strand, 13894913 - 13894735
Alignment:
Q  110 gatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnntcaaac 209  Q
    |||||||||| | | |||||||| ||||||||||| |||| ||||||||||||||| || |||||||||||| | || | |||           ||||||    
T  13894913 gatgaagaaatggaaaattaatttgttgttgttgattcacggtaagataaaatacacatgcgtaattcaatggtttttcattt-aaaaaaaagatcaaac 13894815  T
Q  210 ggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| ||||||||| |||||||||| | ||| | | || | |||||| ||||||||||||  ||||||||||||    
T  13894814 ggtttaaattaaaataattaacaggatctatggtagacaactctttaggttggt-caccatagatatgcgaggttaaagtt 13894735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 15743535 - 15743479
Alignment:
Q  110 gatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacat 166  Q
    ||||||||||  || |||||||||||||||||||||||||| |||||||||||||||    
T  15743535 gatgaagaaagaaaaaattaattagttgttgttgactcaccataagataaaatacat 15743479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 45584916 - 45584985
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||| |||| |||| |||||||||||||||||||| |||| || | |||||||||| ||||||||||    
T  45584916 tcaaacgatttatattaaaataattaataggatctatggtggagcactcttaaagttgggccaccataga 45584985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 48096959 - 48097024
Alignment:
Q  222 aataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||||||||||||||||| | ||||| | |||| |||||||||||||| | |||||||||||||    
T  48096959 aataattaataggatctatggtagaccactcttaaggttggtccaccatatacatttgaggttaaa 48097024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 10711989 - 10711909
Alignment:
Q  210 ggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| || ||||| ||| || |||||||||||| | || | ||||||| | |||||||||||||||||||||||    
T  10711989 ggtttaaattaaaaaaattagtagaatttatgatggaccactctttaggttggtctatcatagatatttgaggttaaagtt 10711909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 14477600 - 14477680
Alignment:
Q  105 aagatgatgaagaaaa-gaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatc 184  Q
    |||| ||||||||||| | |||| ||||||| |||||||  ||||||||||||||||||||||||  ||||| ||||||||    
T  14477600 aagaagatgaagaaaatggagaaataattaggtgttgtttcctcaccgtaagataaaatacatatgtgtaatccaatgatc 14477680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 48096845 - 48096905
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaataca 165  Q
    |||| |||||||||||  | ||||||||||||||| | |||||||||||||||||||||||    
T  48096845 aagaagatgaagaaaaagaaaattaattagttgttatcgactcaccgtaagataaaataca 48096905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 23091527 - 23091476
Alignment:
Q  236 tctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||| |||||    
T  23091527 tctatggtggaccacttttaaagttggtccaccatagacatttgagattaaa 23091476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 290
Target Start/End: Complemental strand, 26286716 - 26286533
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | |||  ||||||| | ||||||| |||||||| |||||||||||  ||||||||  |||| || |||||||           |    
T  26286716 aagaagatgaagaaagggagacataattaggttttgttgattcaccgtacgataaaatacacttacgtaatctaatggtcatccttttaaaaatataa-t 26286618  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||||| ||||||||||||  |||||| |||| ||  ||||||| || ||||||||| | ||||| ||||||||||    
T  26286617 caaacggtttaaattaaaataattaatagagtctatggtggatca-ctttaaaggtgatccaccataaacatttggggttaaagtt 26286533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 49801825 - 49801766
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggt 263  Q
    ||||||||||||||||| |||||||||||| || |||| ||||||| |||||| ||||||    
T  49801825 tcaaacggtttaaattaaaataattaatagaatttatggtggaccacttttaaggttggt 49801766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 12665997 - 12665912
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||||||  | |||||||| |||||||| ||||||| | || ||| |||| ||||||| | ||||||||||||||||    
T  12665997 tcaaacggtttaaattaacaaaattaataagatctatggtggaccactctt-aagatggttcaccataaacatttgaggttaaagtt 12665912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 27556553 - 27556515
Alignment:
Q  125 aattaattagttgttgttgactcaccgtaagataaaata 163  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  27556553 aattaattagttgttgttgactcactgtaagataaaata 27556515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 44999371 - 44999457
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||| ||||||| ||| ||||||||||| |||||||| || |||| | |||   ||||||||||||||| |||| |||||||||||    
T  44999371 tcaaatggtttaagttaaaataattaataagatctatggtgaaccactcttacgattggtccaccatagacatttaaggttaaagtt 44999457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 46110488 - 46110414
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatattt 278  Q
    |||||||||| ||||||  | |||||||| | |||| ||||||||| | |||| |||||||||||||||||||||    
T  46110488 tcaaacggttaaaattaacaaaattaataaggtctacgatggaccactcttaaggttggtccaccatagatattt 46110414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 3616722 - 3616763
Alignment:
Q  124 gaattaattagttgttgttgactcaccgtaagataaaataca 165  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  3616722 gaattaattagttgttgttgactcactctaagataaaataca 3616763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 15746697 - 15746758
Alignment:
Q  226 attaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||||||||||||| ||||||| | ||||  ||||||||||||||| |||||| ||||||    
T  15746697 attaataggatctatggtggaccactcttaagattggtccaccatagacatttgaagttaaa 15746758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 41872874 - 41872821
Alignment:
Q  112 tgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaataca 165  Q
    |||||||| | |||| ||||||  ||||||||||||||||||||||||||||||    
T  41872874 tgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaataca 41872821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 27814497 - 27814425
Alignment:
Q  206 aaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatattt 278  Q
    |||||||| ||||||  | |||||||| | | || ||||||||| ||||||||||||||||||||||| ||||    
T  27814497 aaacggttaaaattaacaaaattaataaggtttacgatggaccacttttaaagttggtccaccatagacattt 27814425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 34350413 - 34350373
Alignment:
Q  125 aattaattagttgttgttgactcaccgtaagataaaataca 165  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  34350413 aattaattagttgttgttgactcaccataagattaaataca 34350373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 46111426 - 46111474
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||||| ||||||| |||||||| ||||||||||| |||||||||||    
T  46111426 aattaataagatctatcatggaccacttttaaagttgatccaccataga 46111474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 6049334 - 6049409
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    |||| |||||||||||| ||||||||| |||||||| | ||||||| | || |  ||||||||||||||| |||||    
T  6049334 tcaatcggtttaaattaaaataattaacaggatctacggtggaccactatttagattggtccaccatagacatttg 6049409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 15072707 - 15072785
Alignment:
Q  212 tttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||  | |||||||||  |||| | ||||||| | || | |||||||||||||||| ||||||||||||||||    
T  15072707 tttaaattaagaaaattaatagagtctacggtggaccactctttaggttggtccaccatagacatttgaggttaaagtt 15072785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 9485221 - 9485282
Alignment:
Q  212 tttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||| ||||||||||||||| |||| |  |||| | ||||||||| |||||||||||    
T  9485221 tttaaattaaaataattaataggatttatggttaaccactcttaaagttgatccaccataga 9485282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 46318527 - 46318572
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggacca 249  Q
    ||||||| ||||||||| |||| ||||||||||||||| |||||||    
T  46318527 tcaaacgatttaaattaaaatatttaataggatctatggtggacca 46318572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 9482644 - 9482577
Alignment:
Q  222 aataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| |||||||| || |||| | |||||||||||||||  |||| ||||| ||||||||||    
T  9482644 aataattaataagatctatggtgaaccactcttaaagttggtccactgtagacatttg-ggttaaagtt 9482577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 18821648 - 18821732
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaag 288  Q
    |||||||||| || ||  || |||||||||||||| || | ||||| | |||| ||| |||||||||||| |||||| |||||||    
T  18821648 tcaaacggttaaattttaaaaaattaataggatctttggtagaccactcttaaggttagtccaccatagacatttgaagttaaag 18821732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 50442883 - 50442839
Alignment:
Q  131 ttagttgttgttgactcaccgtaagataaaatacatatacgtaat 175  Q
    |||||||||||| || ||||||||||||||||| | |||||||||    
T  50442883 ttagttgttgttaacccaccgtaagataaaatagacatacgtaat 50442839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 105 - 290
Target Start/End: Complemental strand, 13621224 - 13621040
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | |||| ||||||  ||||||||||||||||||||||||||||||| | |||||| |||||| | |||||||           |    
T  13621224 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgcgtaatccaatgaccctccttttaaaaaaaaa--t 13621127  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatattt-gaggttaaagtt 290  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| |||| ||||||||||||    
T  13621126 taaacggtttaaattagaataattaataggatctatggtggaccattttttaagtcggtccaccatagacatttggaggttaaagtt 13621040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 105 - 279
Target Start/End: Complemental strand, 49380006 - 49379834
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | |||| ||||||  ||||||||||||||||||||||||||||||| | |||||| |||||| | |||||||           |    
T  49380006 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagataaaatacatctgcgtaatccaatgaccctccttttaaaaaaata--t 49379909  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  49379908 caaacagtttaaattagaataattaataggatctatggtggaccatttttaaagtcggtccaccatagacatttg 49379834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 10301141 - 10301055
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||| |||||||||| |||||||||||||||||||| |||| || | |||| |||||| ||||||||||||||||||||||||||    
T  10301141 tcaaacagtttaaattaaaataattaataggatctatggtggatcactcttaaggttggttcaccatagatatttgaggttaaagtt 10301055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 14745109 - 14745197
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagttga 292  Q
    |||||| |||||||||| |||||||||||||||||||| || |||| | |||| |||||||||||| ||||||||| ||||||||||||    
T  14745109 tcaaacagtttaaattaaaataattaataggatctatggtgaaccactcttaaggttggtccaccacagatatttggggttaaagttga 14745197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 21074091 - 21074167
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatg 181  Q
    |||| |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| | || ||| ||||||||    
T  21074091 aagacgatgaataaaagaaaaattaattagttgttgttgactcactgtaagataaaatagacatgcgtgattcaatg 21074167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 3208692 - 3208625
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||||| | |||| ||||||||||||||    
T  3208692 tcaaacggtttaaattataataattaataggatttatggtggaccactcttaaggttggtccaccata 3208625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 38242424 - 38242493
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| |||||||||||| || |||| ||||||| | |||| ||||||||||||||||    
T  38242424 tcaaacggtttaaattaaaataattaatagaatttatggtggaccactcttaaggttggtccaccataga 38242493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 48083428 - 48083348
Alignment:
Q  210 ggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||| |||||||||||||||||||| | ||||| | |||| ||| || ||||||||| ||||| ||||||||||    
T  48083428 ggtttaaattaaaataattaataggatctatggtagaccactcttaaggttagtgcaccatagacatttgtggttaaagtt 48083348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 10338945 - 10338859
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||| ||| |||||| |||||||||||||||||||| ||||||| | |||| |||||| ||  ||||| || |||||||||||||    
T  10338945 tcaaacagttaaaattaaaataattaataggatctatggtggaccactcttaaggttggttcattatagacatctgaggttaaagtt 10338859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 53194521 - 53194607
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||| || |||||||||||| ||||||| |||| || ||||||  || ||| ||||||||||||| | |||||||||    
T  53194521 tcaaacggtttaaaataaaataattaatagaatctatggtggatcacttttaagatttgtctaccatagatatttaaagttaaagtt 53194607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 54110101 - 54110154
Alignment:
Q  110 gatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaata 163  Q
    ||||||||||   |||||||||||||||||||||||||||| ||||||||||||    
T  54110101 gatgaagaaagagagaattaattagttgttgttgactcaccataagataaaata 54110154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 26886480 - 26886416
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccacc 268  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||||| | |||| |||||| ||||    
T  26886480 tcaaacggtttaaattaaaataattaataggatttatggtggaccactcttaaggttggttcacc 26886416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 35371104 - 35371048
Alignment:
Q  215 aaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    |||||| |||||||||||||||||||| ||||||| | |||| ||||||||||||||    
T  35371104 aaattaaaataattaataggatctatggtggaccactcttaaggttggtccaccata 35371048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 44602873 - 44602913
Alignment:
Q  123 agaattaattagttgttgttgactcaccgtaagataaaata 163  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  44602873 agaattaattagttgttgttgactcactgtaagataaaata 44602913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 27841618 - 27841685
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    |||||| ||| |||||| |||||||| ||||||||||| ||||||| | |||| ||||||||||||||    
T  27841618 tcaaacagttaaaattaaaataattattaggatctatggtggaccactcttaaggttggtccaccata 27841685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 50810718 - 50810804
Alignment:
Q  105 aagatgatgaagaaa-agaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttt 191  Q
    |||| |||||||||| |||| |||||||||| ||||||||| |||||||||||||||||| | || |||||| ||||| || ||||||    
T  50810718 aagaagatgaagaaagagaa-aattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggtcctccttt 50810804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 50865146 - 50865060
Alignment:
Q  105 aagatgatgaagaaa-agaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttt 191  Q
    |||| |||||||||| |||| |||||||||| ||||||||| |||||||||||||||||| | || |||||| ||||| || ||||||    
T  50865146 aagaagatgaagaaagagaa-aattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatggtcctccttt 50865060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 53420524 - 53420441
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||| |||||||||| ||   |||||| | |||||| |||| || ||||||||||||||||||||||| ||||| |||||||    
T  53420524 tcaaacagtttaaattaaaaagtttaataaggtctatggtggatcacttttaaagttggtccaccatagacatttgtggttaaa 53420441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 24487151 - 24487189
Alignment:
Q  125 aattaattagttgttgttgactcaccgtaagataaaata 163  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  24487151 aattaattagttgttgttgacttaccgtaagataaaata 24487189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 10732037 - 10732106
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||||||  |||||| |||||||||||||||||||| ||||||  | | || ||||||||||||||||    
T  10732037 tcaaacggtcgaaattaaaataattaataggatctatggtggaccgctctaaaggttggtccaccataga 10732106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 23443275 - 23443328
Alignment:
Q  112 tgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaataca 165  Q
    |||||||| | |||| ||||||| |||| |||||||||||||||||||||||||    
T  23443275 tgaagaaagggagaaataattaggtgtttttgactcaccgtaagataaaataca 23443328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 50809653 - 50809577
Alignment:
Q  105 aagatgatgaagaaa-agaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatg 181  Q
    |||| |||||||||| |||| |||||||||| ||||||||| |||||||||||||||||| | || |||||| |||||    
T  50809653 aagaagatgaagaaagagaa-aattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatg 50809577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 50866209 - 50866285
Alignment:
Q  105 aagatgatgaagaaa-agaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatg 181  Q
    |||| |||||||||| |||| |||||||||| ||||||||| |||||||||||||||||| | || |||||| |||||    
T  50866209 aagaagatgaagaaagagaa-aattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatg 50866285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 34819194 - 34819262
Alignment:
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||| |||||||||| ||||| |||||||||||||| ||||||| | |||| |||| ||||| |||||    
T  34819194 caaacagtttaaattaaaataagtaataggatctatggtggaccactcttaaggttgatccactataga 34819262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 41264561 - 41264628
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    |||||||||  |||||| |||||||||||||||||||| || |||| | |||||| || |||||||||    
T  41264561 tcaaacggtcgaaattaaaataattaataggatctatggtgtaccactcttaaagatgatccaccata 41264628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 26887497 - 26887551
Alignment:
Q  236 tctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||| ||| ||||| |||||| |||||| |||||||||||||||| |||||||||    
T  26887497 tctacgatagaccacttttaaggttggtacaccatagatatttgaagttaaagtt 26887551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 53614184 - 53614250
Alignment:
Q  207 aacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||| |||||| |||||||| ||||||||||| ||||||| | |||| | || |||||||||||    
T  53614184 aacggttgaaattaaaataattactaggatctatggtggaccactcttaaggatgatccaccataga 53614250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 3455551 - 3455600
Alignment:
Q  222 aataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    ||||||||||| |||||||| ||||||| | |||| ||||||||||||||    
T  3455551 aataattaatatgatctatggtggaccactcttaaggttggtccaccata 3455600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 40244371 - 40244306
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||| | |||| ||||||||| ||||||  ||||||||||||||| | |||| |||||||||    
T  40244371 aattaataaggtctacgatggaccacttttaagtttggtccaccatagacacttgaagttaaagtt 40244306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 12107888 - 12107959
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatat 276  Q
    |||||||||||| |||| || ||  |||||| |||||| ||||||| |||||| |||||||||||||| ||||    
T  12107888 tcaaacggtttatattaaaaaaaa-aatagggtctatggtggaccacttttaaggttggtccaccataaatat 12107959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 28909523 - 28909599
Alignment:
Q  211 gtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||||||| || ||||||||||||||||| |||||||   ||||   |||| ||||| ||||||||| |||||||    
T  28909523 gtttaaattaaaaaaattaataggatctatggtggaccaaccttaagagtggttcaccacagatatttggggttaaa 28909599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 105 - 279
Target Start/End: Complemental strand, 11723091 - 11722918
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| | |||| ||||||  ||||||||||||||||||||| ||||||||  |  ||||| |||||| | |||||||           |    
T  11723091 aagaagatgaagaaagggagaaataattaagtgttgttgactcaccgtaagagaaaatacacctgtgtaatccaatgaccctccttttaaaaaaaaaa-t 11722993  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttg 279  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  11722992 caaacggtttaaattagaataattaataggatctatggtggaccatttttaaagtcggtccaccatagacatttg 11722918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 11967423 - 11967337
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||  | | || |||||||||| ||||| ||||||||||||||||    
T  11967423 tcaaacagtttaaattaaaataattaatatgatctatgatggacccctctcaaggttggtccacaatagacatttgaggttaaagtt 11967337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 7311633 - 7311702
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||||| | |||| |||||| |||||||||    
T  7311633 tcaaacggtttaaattaaaataattaataggatttatggtggaccactcttaaggttggttcaccataga 7311702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 17837824 - 17837755
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| | |||| ||| ||||||||||||    
T  17837824 tcaaacggttgaaattaaaataattaataggatctatggtggaccactcttaatgtttgtccaccataga 17837755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 23392422 - 23392358
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccacc 268  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| |||||| |||| ||||||    
T  23392422 tcaaacggttgaaattaaaataattaataggatctatggtggaccacttttaaggttgatccacc 23392358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 15728929 - 15728854
Alignment:
Q  212 tttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    ||||||||| |  |||||||||| |||||| ||||| || | ||| ||||||||||||||||||||||||||||||    
T  15728929 tttaaattaaagaaattaatagggtctatggtggactatctataatgttggtccaccatagatatttgaggttaaa 15728854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 12669906 - 12669844
Alignment:
Q  228 taataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||| |||||||| ||||||| | |||| |||||||||||||| | ||||||||||||||||    
T  12669906 taatatgatctatggtggaccactcttaaggttggtccaccatacacatttgaggttaaagtt 12669844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 232406 - 232330
Alignment:
Q  105 aagatgatgaagaaa-agaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatg 181  Q
    |||| |||||||||| |||| |||||||||| ||||||||| |||||||||||||||||| | || |||||| |||||    
T  232406 aagaagatgaagaaagagaa-aattaattagatgttgttgattcaccgtaagataaaatagacatgcgtaatccaatg 232330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 5187530 - 5187599
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||| ||| ||||||  ||||||||||||||||||| || |||| |||||| |||||||||| |||||    
T  5187530 tcaaacagttgaaattaatataattaataggatctatggtgaaccacttttaaggttggtccactataga 5187599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 29381638 - 29381703
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccacca 269  Q
    |||||||||| |||||| |||||||||||||||||||| |||| || | |||| ||| ||||||||    
T  29381638 tcaaacggttgaaattaaaataattaataggatctatggtggatcactcttaaggtttgtccacca 29381703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 18346658 - 18346722
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccacc 268  Q
    ||||||||||||||||| ||||||||||||||| |||  ||||||| | |||| |||||| ||||    
T  18346658 tcaaacggtttaaattaaaataattaataggatttatagtggaccactcttaaggttggttcacc 18346722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 290
Target Start/End: Complemental strand, 1102922 - 1102739
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaatacatatacgtaattcaatgatcttccttttnnnnnnnnnnnt 204  Q
    |||| |||||||||| ||| |||||||||| |||| |||||||||||||||||||||||||  | | |||| || || || || |||            |    
T  1102922 aagaagatgaagaaaggaaaaattaattagctgttattgactcaccgtaagataaaatacacttgcataatccactggtcatcattt--aaaaaaaagat 1102825  T
Q  205 caaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||| | |||| ||||||| |||||||| ||||| ||||||||||    
T  1102824 caaacggtttaaattaaaataattaataagatctatggtggaccactcttaaggttggtctaccatagacatttggggttaaagtt 1102739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 8521460 - 8521375
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||| |||| |||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||| | ||||| ||||||||||    
T  8521460 tcaaagggttgaaatta-aataattaataggatctatggtggaccattcttaaggttggtccaccatacacatttggggttaaagtt 8521375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 27705224 - 27705293
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| ||  |||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  27705224 tcaaacggtttaaattaaaaatattaataggatctatggtggaccacttttaaggttggtccaccataga 27705293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 30859079 - 30859148
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| | ||||  |||||||||||||||    
T  30859079 tcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaagattggtccaccataga 30859148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 11262600 - 11262532
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatag 272  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||| | |||| |||||||||||||||    
T  11262600 tcaaatggtttaaattataataattaataggatctatggtggaccactcttaaggttggtccaccatag 11262532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 9220366 - 9220455
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggacca---tttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||||||||| ||||||||||| ||| ||||  ||||||   || |||| |||||||||||||||| ||||||||||||||||    
T  9220366 tcaaacggtttaaattaaaataattaataagatttatgggggaccactcttcttaatgttggtccaccatagacatttgaggttaaagtt 9220455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 10735966 - 10735884
Alignment:
Q  208 acggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||||| ||||||||||| |||||||| |||||   | |||| ||||||||||||||||||||||  |||||||||    
T  10735966 acggtttaaattaaaataattaatatgatctatggtggactgctgttaacgttggtccaccatagatatttggagttaaagtt 10735884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 36898890 - 36898976
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||| |||||||| || ||||||||| || ||||||| ||||| | |||||| ||||| |||||||| ||||||||||||||||||    
T  36898890 tcaaagggtttaaactaaaataattaacagaatctatggtggactacttttaaggttgggccaccataaatatttgaggttaaagtt 36898976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 30910950 - 30910885
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccacca 269  Q
    |||||||||| |||||| |||||||||||||||||||| ||||||| | |||| ||||||||||||    
T  30910950 tcaaacggttgaaattaaaataattaataggatctatggtggaccactcttaaggttggtccacca 30910885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 39604062 - 39603993
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||| |||||||||| |||||||||||||||||||| |||| || |||||| ||||||| ||||||||    
T  39604062 tcaaacagtttaaattaaaataattaataggatctatggtggatcacttttaaggttggtctaccataga 39603993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 1010275 - 1010360
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||| |||| |||||| ||||||||||||||||||||  |||||| | |||| |||||||||||||| | ||||| ||||||||||    
T  1010275 tcaaagggttgaaatta-aataattaataggatctatggcggaccactcttaaggttggtccaccatacacatttggggttaaagtt 1010360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 22047941 - 22047872
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| ||||||| ||||||| |||| ||||||| | |||| |||| |||||||||||    
T  22047941 tcaaacggtttaaattaaaataattcataggatttatggtggaccactcttaaggttgatccaccataga 22047872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 30912093 - 30912158
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||| | ||||||||| |||| |||||| ||||||||||||||||||||||  |||||||||    
T  30912093 aattaataaggtctatgatgtaccacttttaaggttggtccaccatagatatttggagttaaagtt 30912158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 4127162 - 4127248
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||| ||||||||||| | ||||||| |||||||||| ||||||| ||||||  ||| || | |||||| ||||| ||||||||||    
T  4127162 tcaaatggtttaaattaaattaattaacaggatctatggtggaccacttttaagattgatctatcatagacatttggggttaaagtt 4127248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 324225 - 324172
Alignment:
Q  225 aattaataggatctatgatggaccatttttaaagttggtccaccatagatattt 278  Q
    |||||||| | |||||||||||||| | ||||||||||||||||||||| ||||    
T  324225 aattaataaggtctatgatggaccactattaaagttggtccaccatagacattt 324172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 1009374 - 1009325
Alignment:
Q  222 aataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    |||||||||||||||||||| ||||||| | |||| ||||||||||||||    
T  1009374 aataattaataggatctatggtggaccactcttaaggttggtccaccata 1009325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 325095 - 325169
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatattt 278  Q
    |||||||||| ||||||  | |||||||| | |||| ||||||||| | |||| |||||||||||||||| ||||    
T  325095 tcaaacggttaaaattaacaaaattaataaggtctacgatggaccactattaaggttggtccaccatagacattt 325169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 9169792 - 9169707
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||| |||||||||  || |||||||| | ||||||||||||||| | |||  ||||||||| ||||| ||||| ||||||||||    
T  9169792 tcaaactgtttaaatttaaa-aattaatacggtctatgatggaccatctataatattggtccactatagacatttggggttaaagtt 9169707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 223503 - 223471
Alignment:
Q  131 ttagttgttgttgactcaccgtaagataaaata 163  Q
    |||| ||||||||||||||||||||||||||||    
T  223503 ttagatgttgttgactcaccgtaagataaaata 223471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 54092 - 54161
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  54092 tcaaacagtttaaattaaaataattaataggatctatggtggaccacttttaaggttggtccaccataga 54161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 43482 - 43551
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccataga 273  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||| | ||||  |||||||||||||||    
T  43482 tcaaacggtttaaattaaaataattaataggatctatggtggaccactcttaagattggtccaccataga 43551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 108721 - 108654
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccata 271  Q
    ||||| ||||||||||| |||||||||||| ||||||| ||||||| |||||| ||||||||||||||    
T  108721 tcaaaaggtttaaattataataattaatagcatctatggtggaccacttttaaggttggtccaccata 108654  T

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Target: scaffold0034; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 109655 - 109741
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||| |||| ||||||  | |||||||| | |||| ||||||| |||||||| |||||||||||||| | |||||| |||||||||    
T  109655 tcaaatggttaaaattaacaaaattaataaggtctacgatggactatttttaaggttggtccaccatatacatttgaagttaaagtt 109741  T

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Target: scaffold0011 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 127637 - 127554
Alignment:
Q  207 aacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    |||||||||||||| ||  |||||||||||||||| ||||||| | |||| |||| | ||||||||| ||||||||||||||||    
T  127637 aacggtttaaattaaaaacattaataggatctatggtggaccactcttaaggttgtttcaccatagacatttgaggttaaagtt 127554  T

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Target: scaffold0011; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 127737 - 127679
Alignment:
Q  105 aagatgatgaagaaaagaagaattaattagttgttgttgactcaccgtaagataaaata 163  Q
    |||| |||||||||| | | | |||||||| ||||||||||||||||||||||||||||    
T  127737 aagaagatgaagaaagggaaagttaattagatgttgttgactcaccgtaagataaaata 127679  T

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Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 32779 - 32691
Alignment:
Q  204 tcaaacggtttaaattagaataat--taataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagtt 290  Q
    ||||||||||||||||| || ||   |||||||||||||||||||||| |  ||| |||||||||||||||| |||| |||||||||||    
T  32779 tcaaacggtttaaattaaaaaaaaaataataggatctatgatggaccactcctaaggttggtccaccatagacatttaaggttaaagtt 32691  T

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Target: scaffold0219 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 8100 - 8182
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||  | |||| |||| ||||||||||| ||||| |||||||    
T  8100 tcaaacggtttaaattaaaataattaatataatctatgatggacc-ctcttaaggttgatccaccatagacatttggggttaaa 8182  T

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Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 124152 - 124092
Alignment:
Q  227 ttaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaa 287  Q
    |||||| |||||||| ||||||| | |||| |||||||||||||||||||||| |||||||    
T  124152 ttaatacgatctatggtggaccactcttaaggttggtccaccatagatatttggggttaaa 124092  T

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Target: scaffold2071 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 590 - 678
Alignment:
Q  204 tcaaacggtttaaattagaataattaataggatctatgatggaccatttttaaagttggtccaccatagatatttgaggttaaagttga 292  Q
    ||||||||||||||||| || | |||||| | |||||| ||||||| | |||| |||||||||  ||| | ||||||||||||| ||||    
T  590 tcaaacggtttaaattaaaaaatttaataaggtctatggtggaccactcttaaggttggtccattatatacatttgaggttaaacttga 678  T

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