View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357_high_9 (Length: 282)
Name: NF5357_high_9
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 38945063 - 38945288
Alignment:
| Q |
18 |
aaactgagcaattaaggttgattgtcaaaatttggtgagcaactcgacatctagatatgaggtataacgtgtctacctacatagttatcatgaatcaaaa |
117 |
Q |
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| T |
38945063 |
aaactgagcaattaaggttgattgtcaaaatttggtgagcaactcgacatctagatatgaggtataacgtgtctacctacagagttatcatgaatcaaaa |
38945162 |
T |
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| Q |
118 |
cgaaaaataatccatcgataaaaacaaagagaacaataaacgtgcaggtcatgcatggttggaataattatattgaaatattaaaaattgtgaataagga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38945163 |
cgaaaaataatccatcgataaaaacaaagagaacaataaacgtgcaggtcatgcatggttggaataattatattgaaatattaaaaattgtgaataagga |
38945262 |
T |
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| Q |
218 |
cacacaacaaacatctatcctttgtt |
243 |
Q |
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||||||||||||||||| |||||||| |
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| T |
38945263 |
cacacaacaaacatctaacctttgtt |
38945288 |
T |
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