View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357_low_1 (Length: 550)
Name: NF5357_low_1
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 1569718 - 1570157
Alignment:
| Q |
17 |
aatataaccaaataaaaataaaaatgaaggctagtccttcaaatgataaccatgctctacacaccccattgctggaaagtaaacaaaaatcatcaaagtt |
116 |
Q |
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| T |
1569718 |
aatataaccaaataaaaataaaaatgaaggctagtccttcaaatgataaccatgctctacacaccccattgctggaaagtaaacaaaaatcatcaaagtt |
1569817 |
T |
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| Q |
117 |
tatctttgtgacatttggttccattgtatttttattgtcattggttgcacttgcattgactttaaaccaaatccaaaattccttggaaagcattgaaatt |
216 |
Q |
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| T |
1569818 |
tatctttgtgacatttggttccattgtatttctaatgtcaatggttgcacttgcattgacaataaaccaaatccaaaattccttggaaagtattgaaatt |
1569917 |
T |
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| Q |
217 |
actcctcttattaacatttcttcaagtgaaaatttgcctagaggggttgctcaaggggtttcagccaagtcaaatccatctcatttcaatgaagtttcat |
316 |
Q |
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| T |
1569918 |
actcctcttactaacatttcttcaagtgaaaaattgcctagaggggttgctcaaggggtttcagccaagtcaaatccatctcatttcaatgaagtttcat |
1570017 |
T |
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| Q |
317 |
ataattggacaaaagatatgttttcttggcaaagaacagctttccactttcaaccccaaaagaattggatgaatggtaagaataactaagctcatgtttt |
416 |
Q |
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| T |
1570018 |
ataattggacaaaagatatgttttcttggcaaagaacagctttccactttcaaccccaaaataattggatgaatggtaagaataactaagcttatgttt- |
1570116 |
T |
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| Q |
417 |
atatgggtcatgttaactactgtcctgattacactagttaat |
458 |
Q |
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| T |
1570117 |
-tctgggtcatgttaactactgtcctgattacactagttaat |
1570157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 532
Target Start/End: Original strand, 1570190 - 1570231
Alignment:
| Q |
491 |
gtatttttctttatacttttaagagtttgacaacatatcttt |
532 |
Q |
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| T |
1570190 |
gtatttttctttatacttttaagagtttgacaacatatcttt |
1570231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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