View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357_low_11 (Length: 256)
Name: NF5357_low_11
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357_low_11 |
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| [»] scaffold0016 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 43751 - 43641
Alignment:
| Q |
1 |
tgtaaaatgtctggctttggctatctcatccttcattttcctgatttctttacatcatttttgcaggttgcgagattatatgagggctacttacacatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43751 |
tgtaaaatgtctggctttggctatctcatccttcattttcctgatttctttacatcatttttgcaggttgcgagattatatgagggctacttacacatcc |
43652 |
T |
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| Q |
101 |
aggtcagctac |
111 |
Q |
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||||||||||| |
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| T |
43651 |
aggtcagctac |
43641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 43600 - 43496
Alignment:
| Q |
152 |
tagatgatcttaggtgtgcctctttaatgattttaatggtgnnnnnnnacaatactatataacttcattttaccagctcattccgtttacaatatgctgg |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43600 |
tagatgatcttaggtgtgcctctttaatgattttaatggtgtttttttacaatactatataacttcattttaccagctcattccgtttacaatatgctgg |
43501 |
T |
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| Q |
252 |
ttctt |
256 |
Q |
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||||| |
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| T |
43500 |
ttctt |
43496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 27258905 - 27258822
Alignment:
| Q |
1 |
tgtaaaatgtctggctttggctatctcatccttcattttcctgatttctttacatcatttttgcaggttgcgagattatatgag |
84 |
Q |
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| T |
27258905 |
tgtaaaatgtctggctttggctatctcatccttcattttcctgatttctttacatcatttttgcaggttgcgagattatatgag |
27258822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 2682072 - 2681968
Alignment:
| Q |
152 |
tagatgatcttaggtgtgcctctttaatgattttaatggtgnnnnnnnacaatactatataacttcattttaccagctcattccgtttacaatatgctgg |
251 |
Q |
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| T |
2682072 |
tagatgatcttatgtgtgcctctttaatgattttaatggtgtttttttacaatactatataacttcattttaccagctcattctgtttacaatatgttgg |
2681973 |
T |
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| Q |
252 |
ttctt |
256 |
Q |
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||||| |
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| T |
2681972 |
ttctt |
2681968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2682239 - 2682156
Alignment:
| Q |
1 |
tgtaaaatgtctggctttggctatctcatccttcattttcctgatttctttacatcatttttgcaggttgcgagattatatgag |
84 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
2682239 |
tgtaaaatgtcttgctttggctatctcatccttcattttcctgatttccttacatcatttttgcaggctgcgagattatatgag |
2682156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 5481072 - 5481155
Alignment:
| Q |
1 |
tgtaaaatgtctggctttggctatctcatccttcattttcctgatttctttacatcatttttgcaggttgcgagattatatgag |
84 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
5481072 |
tgtaaaatgtcttgctttggctatctcatccttcattttcctgatttccttacatcatttttgcaggctgcgagattatatgag |
5481155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 5481239 - 5481343
Alignment:
| Q |
152 |
tagatgatcttaggtgtgcctctttaatgattttaatggtgnnnnnnnacaatactatataacttcattttaccagctcattccgtttacaatatgctgg |
251 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
5481239 |
tagatgatcttatgtgtgcctctttaatgattttaatggtgtttttttacaatactatataacttcattttaccagctcattctgtttacaatatgttgg |
5481338 |
T |
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| Q |
252 |
ttctt |
256 |
Q |
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||||| |
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| T |
5481339 |
ttctt |
5481343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 45005498 - 45005394
Alignment:
| Q |
152 |
tagatgatcttaggtgtgcctctttaatgattttaatggtgnnnnnnnacaatactatataacttcattttaccagctcattccgtttacaatatgctgg |
251 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
45005498 |
tagatgatcttatgtgtgcctctttaatgattttaatggtgtttttttacaatactatataacttcattttaccagctcattctgtttacaatatgttgg |
45005399 |
T |
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| Q |
252 |
ttctt |
256 |
Q |
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||||| |
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| T |
45005398 |
ttctt |
45005394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 45005665 - 45005582
Alignment:
| Q |
1 |
tgtaaaatgtctggctttggctatctcatccttcattttcctgatttctttacatcatttttgcaggttgcgagattatatgag |
84 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
45005665 |
tgtaaaatgtcttgctttggctatctcatccttcattttcctgatttccttacatcatttttgcaggctgcgagattatatgag |
45005582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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