View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357_low_2 (Length: 530)
Name: NF5357_low_2
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 210 - 510
Target Start/End: Original strand, 7500243 - 7500543
Alignment:
| Q |
210 |
gcggttggagtagctatgaaggaaggagagttctgaagatgcgtaggaatgtgtgatttgtgtcttaactttcaagggggttccctacttatatgttgtg |
309 |
Q |
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| T |
7500243 |
gcggttggagtagctatgaaggaaggagagttctgaagatgcgtaggaatgtgtgatttgtgtcttaactttcaagggggttccctacttatatgttgtg |
7500342 |
T |
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| Q |
310 |
tattaaaataataagttgttttttatgcatatgtttctatctatgttttaggcttgtttggtacagaagttgaaggtttctgtttcatgaagtttgctta |
409 |
Q |
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| T |
7500343 |
tattaaaataataagttgttttttatgcatatgtttctatctatgttttaggcttgtttggtacagaagttgaaggtttctgtttcatgaagtttgctta |
7500442 |
T |
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| Q |
410 |
gcactaatgtagctgtattaattagaataagaactactgttaggcactcatgtgtattttaataagaaccttcaatcttcaatctttttctaatgctatg |
509 |
Q |
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| T |
7500443 |
gcactaatgtagctgtattaattagaataagaactactgttaggcactcatgtgtattttaataagaaccttcaaccttcaatctttttgttatgctatg |
7500542 |
T |
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| Q |
510 |
t |
510 |
Q |
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| T |
7500543 |
t |
7500543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 210 - 497
Target Start/End: Original strand, 15171463 - 15171749
Alignment:
| Q |
210 |
gcggttggagtagctatgaaggaaggagagttctgaagatgcgtaggaatgtgtgatttgtgtcttaactttcaagggggttccctacttatatgttgtg |
309 |
Q |
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| T |
15171463 |
gcggttggagtagctttgatggaagaagagttctgaagatgcgtaggagtgtgtgatttgtgtcttaactttcaagagggttcactacttatatgttgtg |
15171562 |
T |
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| Q |
310 |
tattaaaataataagttgttttttatgcatatgtttctatct-atgttttaggcttgtttggtacagaagttgaaggtttctgtttcatgaagtttgctt |
408 |
Q |
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| T |
15171563 |
tattaaaataataagctgttatttatgcatatgtttctatctaaggtttcatgcttgtttggcacagaagttgaaggtttatgtttcaggaagtttgctt |
15171662 |
T |
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| Q |
409 |
agcactaatgtagctgtattaattagaataagaactactgttaggcactcatgtgtattttaataagaaccttcaatcttcaatctttt |
497 |
Q |
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| T |
15171663 |
agcactgatgaggctgtattgattagaataagaactactgttaggcactc--gtgtatttcaataaaaaccttcaatcctcaatctttt |
15171749 |
T |
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