View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5357_low_3 (Length: 515)

Name: NF5357_low_3
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5357_low_3
NF5357_low_3
[»] chr7 (9 HSPs)
chr7 (69-497)||(35702202-35702639)
chr7 (61-188)||(34913782-34913906)
chr7 (191-333)||(34906246-34906388)
chr7 (191-333)||(34913937-34914079)
chr7 (61-188)||(34906419-34906546)
chr7 (192-273)||(33032721-33032802)
chr7 (192-271)||(33120281-33120360)
chr7 (191-267)||(1470643-1470719)
chr7 (80-129)||(35725686-35725737)
[»] chr4 (3 HSPs)
chr4 (192-397)||(41108158-41108363)
chr4 (396-493)||(41108721-41108818)
chr4 (68-188)||(41108009-41108126)
[»] scaffold0036 (1 HSPs)
scaffold0036 (61-188)||(19749-19873)
[»] chr5 (6 HSPs)
chr5 (191-268)||(10101079-10101156)
chr5 (191-268)||(9678699-9678776)
chr5 (191-268)||(10104882-10104959)
chr5 (192-268)||(10214390-10214466)
chr5 (199-267)||(21036237-21036305)
chr5 (203-267)||(20982836-20982899)
[»] chr6 (2 HSPs)
chr6 (199-264)||(26384421-26384486)
chr6 (226-270)||(22366689-22366733)
[»] chr8 (2 HSPs)
chr8 (200-265)||(7224365-7224430)
chr8 (207-267)||(1086910-1086970)
[»] chr3 (1 HSPs)
chr3 (207-267)||(5130615-5130675)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 69 - 497
Target Start/End: Complemental strand, 35702639 - 35702202
Alignment:
Q  69 gttgggtctgtaagaacaccattcaaccaccccagacagcgtgtgtctgagaacaatcatcagcagcacaagatgatg---tctcaacatgagaagaatc 165  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||   |||||||||||||||||||    
T  35702639 gttgagtctgtaagaacaccatgcaaccaccccagacagcgtgtgtctgagaacgatcatctacagcacaagatgatgatgtctcaacatgagaagaatc 35702540  T
Q  166 atctcagccgttaatcacgctct-at-gtatgctc--ctgtc----tcct-tagaaatcaaagaaacaatagtacgatcctatagaacagatcctattca 256  Q
    ||||||||||||||||||||||| || | | | |   || ||    |||| ||| ||||| ||| ||| |||||| ||||||||||||||||||| ||||    
T  35702539 atctcagccgttaatcacgctctgatcgcacggttgtctttcatcatcctataggaatcatagacacagtagtaccatcctatagaacagatcctgttca 35702440  T
Q  257 agtaaggtcgtgaccaatgattcacgcgtgtgctgtataaacatttgagttctgctagtttcaaacgatgtgggactaaaagcctgtttctgttgtaata 356  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35702439 agtaaggtcgtgaccaatgattcacgcgtgtgctatataaacatttgagttctgctagtttcaaacgatgtgggactaaaagcctgtttctgttgtaata 35702340  T
Q  357 cttgcttataaaaacgcttctgactcttgaaaattgcagctgtatcagtgcaggatcaacctctccaacctgcccagtcatgagagtggctgcaccataa 456  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||    
T  35702339 cttggttataaaaacgcttctgactcttgaaaattgcagctgtatcagtgtaggatcaacctctcca---tgcccagtcatgagagtggctgcaccataa 35702243  T
Q  457 ttcacgtttgaagctttcctgatgcaatcatggggtgggat 497  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35702242 ttcacgtttgaagctttcctgatgcaatcatggggtgggat 35702202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 34913782 - 34913906
Alignment:
Q  61 aaaaaagtgttgggtctgtaagaacaccattcaaccaccccagacagcgtgtgtctgagaacaatcatcagcagcacaagatgatgtctcaacatgagaa 160  Q
    |||| |||||||||||||||||| |||| | ||||||||||||||| | ||||||||||||| ||||||  |||||||||||||||||||||||||   |    
T  34913782 aaaagagtgttgggtctgtaagagcaccgtgcaaccaccccagacaacatgtgtctgagaacgatcatctacagcacaagatgatgtctcaacatg---a 34913878  T
Q  161 gaatcatctcagccgttaatcacgctct 188  Q
    ||||||||| ||||||||||||||||||    
T  34913879 gaatcatctaagccgttaatcacgctct 34913906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 191 - 333
Target Start/End: Complemental strand, 34906388 - 34906246
Alignment:
Q  191 gtatgctcctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgtgaccaatgattcacgcgtgtgct 290  Q
    ||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||| | || | |||| ||||| |    
T  34906388 gtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgacaattgttccacgtgtgtgtt 34906289  T
Q  291 gtataaacatttgagttctgctagtttcaaacgatgtgggact 333  Q
     |||||||| ||||| | ||||| ||| ||| |||||||||||    
T  34906288 atataaacacttgagctgtgctaattttaaatgatgtgggact 34906246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 191 - 333
Target Start/End: Original strand, 34913937 - 34914079
Alignment:
Q  191 gtatgctcctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgtgaccaatgattcacgcgtgtgct 290  Q
    ||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||| | || | |||| ||||| |    
T  34913937 gtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgacaattgttccacgtgtgtgtt 34914036  T
Q  291 gtataaacatttgagttctgctagtttcaaacgatgtgggact 333  Q
     |||||||| ||||| | ||||| ||| ||| |||||||||||    
T  34914037 atataaacacttgagctgtgctaattttaaatgatgtgggact 34914079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 34906546 - 34906419
Alignment:
Q  61 aaaaaagtgttgggtctgtaagaacaccattcaaccaccccagaca---gcgtgtgtctgagaacaatcatcagcagcacaagatgatgtctcaacatga 157  Q
    |||| |||||||||||||||||| |||| | |||||||||||||||   || ||||||||||||| ||||||  |||||||||||||||||||||||||     
T  34906546 aaaagagtgttgggtctgtaagagcaccgtgcaaccaccccagacacatgcatgtgtctgagaacgatcatctacagcacaagatgatgtctcaacatg- 34906448  T
Q  158 gaagaatcatctcagccgttaatcacgctct 188  Q
      |||||||||| ||||||||||||||||||    
T  34906447 --agaatcatctaagccgttaatcacgctct 34906419  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 33032721 - 33032802
Alignment:
Q  192 tatgctcctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgtgaccaa 273  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  33032721 tatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgaccaa 33032802  T

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Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 33120281 - 33120360
Alignment:
Q  192 tatgctcctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgtgacc 271  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  33120281 tatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgacc 33120360  T

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Target: chr7; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 1470643 - 1470719
Alignment:
Q  191 gtatgctcctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgt 267  Q
    ||||| ||||||||||||||||||||| || ||| |||||||||||||||||| ||||| | |||||||||||||||    
T  1470643 gtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaatagatcatgttcaagtaaggtcgt 1470719  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 35725737 - 35725686
Alignment:
Q  80 aagaacaccattcaaccaccccagacagcgt--gtgtctgagaacaatcatc 129  Q
    ||||||||| | |||||||||||||||||||  |||||||||||| ||||||    
T  35725737 aagaacaccgtgcaaccaccccagacagcgtgtgtgtctgagaacgatcatc 35725686  T

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Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 192 - 397
Target Start/End: Original strand, 41108158 - 41108363
Alignment:
Q  192 tatgctcctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgtgaccaatgattcacgcgtgtgctg 291  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||||||| | || | |||||||||| |     
T  41108158 tatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtgactattgctccacgcgtgtgtta 41108257  T
Q  292 tataaacatttgagttctgctagtttcaaacgatgtgggactaaaagcctgtttctgttgtaatacttgcttat-aaaaacgcttctgactcttgaaaat 390  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||| | |||||||||| |||||||||||| ||||| |||| |||||||||||| |    
T  41108258 tataaacacttgagttcttctagtttcaaacgatgtgggactaaaagcttctttctgttgt-atacttgcttataaaaaatgcttttgactcttgaaagt 41108356  T
Q  391 tgcagct 397  Q
    | |||||    
T  41108357 tccagct 41108363  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 396 - 493
Target Start/End: Original strand, 41108721 - 41108818
Alignment:
Q  396 ctgtatcagtgcaggatcaacctctccaacctgcccagtcatgagagtggctgcaccataattcacgtttgaagctttcctgatgcaatcatggggtg 493  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41108721 ctgtatcagtgcaggatcaacctttccaacctgcccagtcatgagagtggctgcaccataattcacgtttgaagctttcctgatgcaaacatggggtg 41108818  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 68 - 188
Target Start/End: Original strand, 41108009 - 41108126
Alignment:
Q  68 tgttgggtctgtaagaacaccattcaaccaccccagacagcgtgtgtctgagaacaatcatcagcagcacaagatgatgtctcaacatgagaagaatcat 167  Q
    ||||| |||||||||| |||||| | ||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||||   ||||||||    
T  41108009 tgttgagtctgtaagagcaccatgcgaccaccccagacagcgtgtgtctgagaacgatcatctacagcacaagattatgtctcaacatg---agaatcat 41108105  T
Q  168 ctcagccgttaatcacgctct 188  Q
    ||||||| |||||||||||||    
T  41108106 ctcagccattaatcacgctct 41108126  T

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Target: scaffold0036 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 19873 - 19749
Alignment:
Q  61 aaaaaagtgttgggtctgtaagaacaccattcaaccaccccagacagcgtgtgtctgagaacaatcatcagcagcacaagatgatgtctcaacatgagaa 160  Q
    ||||||||||||||| ||||||| |||| | |  |||||||||| ||||| ||||||||||| || |||  |||||||||||||||||| ||||||   |    
T  19873 aaaaaagtgttgggtatgtaagagcaccgtgcggccaccccagatagcgtttgtctgagaacgattatctacagcacaagatgatgtcttaacatg---a 19777  T
Q  161 gaatcatctcagccgttaatcacgctct 188  Q
    ||||||||||||||||||||||||||||    
T  19776 gaatcatctcagccgttaatcacgctct 19749  T

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Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 10101079 - 10101156
Alignment:
Q  191 gtatgctcctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgtg 268  Q
    ||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  10101079 gtatgttcctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtg 10101156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 9678776 - 9678699
Alignment:
Q  191 gtatgctcctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgtg 268  Q
    ||||| |||||||||||| |||||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||    
T  9678776 gtatgttcctgtctcctttgaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgtg 9678699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 10104882 - 10104959
Alignment:
Q  191 gtatgctcctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgtg 268  Q
    |||||||||||||| |||||||||||| || ||| |||||  ||||||||||||||||||| ||||||||||||||||    
T  10104882 gtatgctcctgtcttcttagaaatcaaggacacagtagtataatcctatagaacagatcctgttcaagtaaggtcgtg 10104959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 10214466 - 10214390
Alignment:
Q  192 tatgctcctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgtg 268  Q
    |||| |||| |||||||||||||||| || ||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  10214466 tatgttcctatctccttagaaatcaaggacacagtagtacaatcctatagaacagatcctgttcaagtaaggtcgtg 10214390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 21036237 - 21036305
Alignment:
Q  199 ctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgt 267  Q
    |||| |||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||||    
T  21036237 ctgtttccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggtcgt 21036305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 20982836 - 20982899
Alignment:
Q  203 ctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgt 267  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||| ||| |||||||||||    
T  20982836 ctccttagaaatcaaggatacaatagtacgatcctatagatcagatcctgttc-agtaaggtcgt 20982899  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 26384486 - 26384421
Alignment:
Q  199 ctgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggt 264  Q
    ||||||||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||    
T  26384486 ctgtctccttagaaatcaaggacacagtagtacgatcctatagaacagatcctgttcaagtaaggt 26384421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 22366733 - 22366689
Alignment:
Q  226 tagtacgatcctatagaacagatcctattcaagtaaggtcgtgac 270  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||    
T  22366733 tagtacgatcctatagaacagatcctgttcaaataaggtcgtgac 22366689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 7224430 - 7224365
Alignment:
Q  200 tgtctccttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtc 265  Q
    |||||||||||||||||| ||  ||||  ||||||||||||||||| ||| |||| ||||||||||    
T  7224430 tgtctccttagaaatcaaggacgcaatgttacgatcctatagaacaaatcatatttaagtaaggtc 7224365  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 1086910 - 1086970
Alignment:
Q  207 ttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgt 267  Q
    ||||||||||| || |||||||||||||| |||| || ||||| | |||||||||||||||    
T  1086910 ttagaaatcaaggacacaatagtacgatcttataaaatagatcttgttcaagtaaggtcgt 1086970  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 5130675 - 5130615
Alignment:
Q  207 ttagaaatcaaagaaacaatagtacgatcctatagaacagatcctattcaagtaaggtcgt 267  Q
    ||||||||||| || ||| || |||||||||||| || ||||| | |||||||||||||||    
T  5130675 ttagaaatcaaggacacagtaatacgatcctataaaagagatcttgttcaagtaaggtcgt 5130615  T

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