View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357_low_4 (Length: 427)
Name: NF5357_low_4
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 43470408 - 43469994
Alignment:
| Q |
1 |
gaatgatatacacataa-tataagaagatggttcttttaatcagataagaattcattatggttcatgaatgtcagaggttaatctaccttatcccaacat |
99 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43470408 |
gaatcatatacacataaatataagaagatggttcttttaatcagataagaattcattatggttcatgaatgtcagaggttaatctaccttatcccaacat |
43470309 |
T |
|
| Q |
100 |
tgtgatctaatttgtctactttttgttaacacaagcattgacaagtaacaatcttctgatactttattttttcttagtgttttataacatggtttcctct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43470308 |
tgtgatctaatttgtctactttttgttaacacaagcattgacaagtaacaatcttctgatactttattttttcttagtgttttataacatggtttcctct |
43470209 |
T |
|
| Q |
200 |
taagtagcaaggactaaatataattttgtacatgttttatgccacgttgccacgtttattgagctggaaggagagtgatggatttgtaattaaattaaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43470208 |
taagtagcaaggactaaatataattttgtacatgttttatgccacgttgccacgtttattgagctggaaggagagtgatggatttgtaattaaattaaat |
43470109 |
T |
|
| Q |
300 |
acaatgaatttggaaagttgtataggaataatccagggtgtggtttaattagatgaggtgtgtgtttgtgatgaaaggttgttgtatagagaggttttgt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43470108 |
acaatgaatttggaaagttgtataggaataatccagggtgtggtttaattagatgaggtgtgtgtttgtgatgaaaggttgttgtatagagaggttttgt |
43470009 |
T |
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| Q |
400 |
ttggtgtatatgatg |
414 |
Q |
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| T |
43470008 |
ttggtgtatatgatg |
43469994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 10642454 - 10642559
Alignment:
| Q |
34 |
ttttaatcagataagaattcattatggttcatgaatgtcagaggttaatctaccttatcccaacattgtgatctaatttgtctactttttgttaacacaa |
133 |
Q |
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| T |
10642454 |
ttttaatcaaataagaattcattatagttcatgaatgtcagaggttaatctaccttatccctacactgtgatctagtttgtctactttttgttaacacaa |
10642553 |
T |
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| Q |
134 |
gcattg |
139 |
Q |
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|||||| |
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| T |
10642554 |
gcattg |
10642559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 32713385 - 32713270
Alignment:
| Q |
24 |
aagatggttcttttaatcagataagaattcattatggttcatgaatgtcagaggttaatctaccttatcccaacattgtgatctaatttgtctacttttt |
123 |
Q |
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| T |
32713385 |
aagatgattatttaaatcaaataagaattcattatagttcatgaatgtcagaggttaatctaccttattcctacactgtgatctagtttgtctacttttt |
32713286 |
T |
|
| Q |
124 |
gttaacacaagcattg |
139 |
Q |
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||||| |||||||||| |
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| T |
32713285 |
gttaatacaagcattg |
32713270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 10642586 - 10642645
Alignment:
| Q |
225 |
ttgtacatgttttatgccacgttgccacgtttattgagctggaaggagagtgatggattt |
284 |
Q |
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|||||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
10642586 |
ttgtacatgttttacgctacgttgccacgtttattgaactggatggagagtgatggattt |
10642645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 32713243 - 32713193
Alignment:
| Q |
234 |
ttttatgccacgttgccacgtttattgagctggaaggagagtgatggattt |
284 |
Q |
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| T |
32713243 |
ttttacgctacgttgccatgtttattgaactggatggagagtgatggattt |
32713193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 44 - 139
Target Start/End: Complemental strand, 23924185 - 23924090
Alignment:
| Q |
44 |
ataagaattcattatggttcatgaatgtcagaggttaatctaccttatcccaacattgtgatctaatttgtctactttttgttaacacaagcattg |
139 |
Q |
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| T |
23924185 |
ataagaattcattatagttcatgaatgtcagaagttaatctaccttatccctacactgtgatctagtttgtctactttttgttaacacaagcattg |
23924090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 23924063 - 23924004
Alignment:
| Q |
225 |
ttgtacatgttttatgccacgttgccacgtttattgagctggaaggagagtgatggattt |
284 |
Q |
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|||||||||||||| || ||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
23924063 |
ttgtacatgttttacgctacgttgccacgtttattgaactggatggagagtgatggattt |
23924004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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