View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357_low_5 (Length: 359)
Name: NF5357_low_5
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 61 - 349
Target Start/End: Original strand, 16238463 - 16238747
Alignment:
| Q |
61 |
ggaaaaaattaacaagttaattaccaaaatgtgatttaannnnnnnaatacgcaaattttagtggttaatctgttaggaggaaaaattgtgaatttttta |
160 |
Q |
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| T |
16238463 |
ggaaaaaattaacaagttaaataccaaaatgtgatttaatttttttaatacgcaaattttaatggttaatctgttaggaggaaaaattgtgaatttttta |
16238562 |
T |
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| Q |
161 |
gcgcataaatcaaattgttgacctttttattgaactcgtttagtctcaactgatcatatcattgggctctacattcgataatgtaccaaaatatgtttag |
260 |
Q |
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| T |
16238563 |
gtgcataaatcaaaccgttgacctttttattgaactcgtttagtctcaac---tcatatcattggactctaccttcgagaatgtaccaaaatgtgtttag |
16238659 |
T |
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| Q |
261 |
ttagacctagcagggccactataaatgaactcgaacatatttttcttggaaaattgctcttctcccatttaaaactgctcactcctttg |
349 |
Q |
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| T |
16238660 |
ttagacctagcagggccac-ataaatgaactcgaacatacttttcttgaaaaattgttcttctcccatttaaaattgctcactcctttg |
16238747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 16238420 - 16238449
Alignment:
| Q |
16 |
caccaccaacattgaattaaaaattagcaa |
45 |
Q |
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| T |
16238420 |
caccaccaacattgaattaaaaattagcaa |
16238449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 23537757 - 23537793
Alignment:
| Q |
309 |
gaaaattgctcttctcccatttaaaactgctcactcc |
345 |
Q |
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| T |
23537757 |
gaaaattgctcttctcccatataaaattgctcactcc |
23537793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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