View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357_low_6 (Length: 358)
Name: NF5357_low_6
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 40497650 - 40497328
Alignment:
| Q |
15 |
atgaagagggtgttgtatttgttgaagctgaagcgaactgtatggtggaggatttgagtgatgtgaaggagcctgaccttgatattcttagaaaactagt |
114 |
Q |
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| T |
40497650 |
atgaagagggtgttgtatttgttgaagctgaagcgaactgtatggtggaggatttgagtgatgtgaaggagcctgaccttgatattcttagaaaactagt |
40497551 |
T |
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| Q |
115 |
ttatgacattcctactgcaaagaacttactagagatgcctccacttctaattcaggtttttgtttatatttacattgtcatgaaattcgatgtttgttaa |
214 |
Q |
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| T |
40497550 |
ttatgacatccctactgcaaagaacttactagagatgcctccacttctaattcaggtttttgtttatatttacattgtcatgaaatttgatgtttgttaa |
40497451 |
T |
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| Q |
215 |
attaaagaactcttgttaaagaacttactgacttattaggtgatgagtatcattctttataaactctttttaagtgtcttatcttttatatgtgcgactt |
314 |
Q |
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| T |
40497450 |
attaaagaactcttgttaaagaactcactgacttattaggtgatgagtatcattctttataaactctttttaagtgtcttatcttttatatgtgcgactt |
40497351 |
T |
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| Q |
315 |
gggttgtcttgatacacacctca |
337 |
Q |
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| T |
40497350 |
gggttgtcttgatacacacctca |
40497328 |
T |
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