View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5357_low_7 (Length: 342)
Name: NF5357_low_7
Description: NF5357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5357_low_7 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 43191 - 43516
Alignment:
| Q |
17 |
cataattagaacaaagacacgaacatgctatagcaaaatatagtagataaacaatgataaatgagtcatagcatcgtacaaatcttgtgattttgaatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43191 |
cataattagaacaaagacacgaacatgctatagcaaaatatagtagataaacaatgataaatgagtcatagcatcgtacaaatcttgtgattttgaatat |
43290 |
T |
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| Q |
117 |
ggctcttccaagatgttgtagaacaacacaaaacgatcatgtaaagttcttgtctaaacttcacatttggatgcactaaaatgttaaatgaaatgagtgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43291 |
ggctcttccaagatgttgtagaacaacacaaaacgatcatgtaaagttcttgtctaaacttcacatttgggtgcactaaaatgttaaatgaaatgagtgc |
43390 |
T |
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| Q |
217 |
ataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaatgaatcttgtgcttgactcta |
316 |
Q |
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| T |
43391 |
ataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaatgaatcttgtgcttgactcta |
43490 |
T |
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| Q |
317 |
aataaaagaaccagcatattgtaaac |
342 |
Q |
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| T |
43491 |
aataaaagaaccagcatattgtaaac |
43516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 209 - 342
Target Start/End: Original strand, 2681858 - 2681988
Alignment:
| Q |
209 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaatgaatcttgtgct |
308 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
2681858 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaata---ctatttttatggaacaaaacaatgaatcttgtgct |
2681954 |
T |
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| Q |
309 |
tgactctaaataaaagaaccagcatattgtaaac |
342 |
Q |
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| T |
2681955 |
tgactctaaacaaaagaaccaacatattgtaaac |
2681988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 209 - 342
Target Start/End: Complemental strand, 5481453 - 5481323
Alignment:
| Q |
209 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaatgaatcttgtgct |
308 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
5481453 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaata---ctatttttatggaacaaaacaatgaatcttgtgct |
5481357 |
T |
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| Q |
309 |
tgactctaaataaaagaaccagcatattgtaaac |
342 |
Q |
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|||||||||| |||||||||| |||||||||||| |
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| T |
5481356 |
tgactctaaacaaaagaaccaacatattgtaaac |
5481323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 209 - 342
Target Start/End: Original strand, 45005284 - 45005414
Alignment:
| Q |
209 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaatgaatcttgtgct |
308 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
45005284 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaata---ctatttttatggaacaaaacaatgaatcttgtgct |
45005380 |
T |
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| Q |
309 |
tgactctaaataaaagaaccagcatattgtaaac |
342 |
Q |
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|||||||||| |||||||||| |||||||||||| |
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| T |
45005381 |
tgactctaaacaaaagaaccaacatattgtaaac |
45005414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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