View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5358-Insertion-2 (Length: 768)
Name: NF5358-Insertion-2
Description: NF5358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5358-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 9 - 765
Target Start/End: Original strand, 7569410 - 7570169
Alignment:
| Q |
9 |
taacagcccgacttgcagtgcctgcagtcgatctagatccgtcgatgttgtagatgaagtgataatctattattgccttggtttgttaacatgaaatagt |
108 |
Q |
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| T |
7569410 |
taacagcccgacttgcagtgcctgcagtcgatctagatccgtcgatgttgtagatgaagtgataatctattattgccttggtttgttaacatgaaatagt |
7569509 |
T |
|
| Q |
109 |
taattggtggtaggtacatcaacaaaagcattaatcaaaggtataaatacatggaaaaaggaaacgatgttgaaaaaggtaaatttaccttagacaccta |
208 |
Q |
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| T |
7569510 |
taattggtggtaggtacatcaacaaaagcattaatcaaaggcataaatacatggaaaaaggaaacaatgttgaaaaaggtaaatttaccttagacactta |
7569609 |
T |
|
| Q |
209 |
aattttttgaagttgagtctcatttcttcatcctctggtgataagaaagctactttgacatgcaggaaacagccaagcagttagaagaagaaccaaaaac |
308 |
Q |
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| T |
7569610 |
aattttttgaagttgagtctcattccttcatcctccggtgataagaaagctactttgacatgcaggaaacagccaagcagttagaagaagaaccaaaaac |
7569709 |
T |
|
| Q |
309 |
tggtggtaagtccttataagcaaatt--aaacaccttaggaaaatagagtgaaaggattcatatacgtcgtaatttaaataatttattttactaaaataa |
406 |
Q |
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| T |
7569710 |
tggtggtaagtccttataagcaaattaaaaacaccttaggaaaatagagtgaaaggattcatatacgtcgtaatttaaataatttattttactaaaataa |
7569809 |
T |
|
| Q |
407 |
attgaaaaacaatttgtagacgtgtcataagatattttcataagttgtctcgaatgttgacacaaatatttgttataatataagctaaaataagttgtaa |
506 |
Q |
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| T |
7569810 |
attgaaaaacaatttatagacgtgtcataagatattttcataagttgcctcgaatgttgacacaaatatttattataatataagctaaaataagttgtaa |
7569909 |
T |
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| Q |
507 |
cccggtaaataaattctttgatacgcaccgatttatgatagaaaatatctcaaatatttattgttggaactttgaatgaactgta-tacttcaagttata |
605 |
Q |
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| T |
7569910 |
cccggtaaataaattcttcgatacgcaccgatttattatagaaaatatctcaaatatttattgttggaactttgaatgaactgtattacttcaagttata |
7570009 |
T |
|
| Q |
606 |
acaattatttgagatgcttatgcagaagactacaagcccctaccaaagggtccaggtgaaatacaagatgaagtggtaatggcaacagtttttcaaaatc |
705 |
Q |
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| T |
7570010 |
acaattatttgagatgcttatgcagaagactacaagcccctaccaaagggtccaggtgaaatacaagatgaagtggtaatggcaacagtttttcaatatc |
7570109 |
T |
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| Q |
706 |
aattttaaaattctattactaatttatcaactattaaaatgtatcacttatccatgtagg |
765 |
Q |
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| T |
7570110 |
aattttaaaattctattactaatttatcaactattaaaatgtatcacttatccatgtagg |
7570169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 33125717 - 33125640
Alignment:
| Q |
113 |
tggtggtaggtacatcaacaaaagcattaatcaaaggtataaatacatggaaaaaggaaacgatgttgaaaaaggtaa |
190 |
Q |
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||||| |||||||||| || ||||| ||| ||||||| ||| ||||||||||||||||||| || |||||||||||| |
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| T |
33125717 |
tggtgataggtacatccactaaagctttagtcaaaggcatagatacatggaaaaaggaaacaattatgaaaaaggtaa |
33125640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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