View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5359-Insertion-1 (Length: 633)

Name: NF5359-Insertion-1
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5359-Insertion-1
NF5359-Insertion-1
[»] chr1 (33 HSPs)
chr1 (8-633)||(3378966-3379591)
chr1 (63-424)||(3372970-3373334)
chr1 (69-324)||(2006737-2006992)
chr1 (513-633)||(3362460-3362580)
chr1 (243-361)||(4322566-4322684)
chr1 (481-633)||(3373416-3373568)
chr1 (167-313)||(2012328-2012474)
chr1 (514-630)||(4334196-4334312)
chr1 (514-591)||(4322347-4322424)
chr1 (523-627)||(2007223-2007327)
chr1 (117-363)||(4334454-4334700)
chr1 (514-579)||(3341995-3342060)
chr1 (523-627)||(2012706-2012810)
chr1 (519-633)||(3217778-3217892)
chr1 (516-633)||(6601015-6601132)
chr1 (521-633)||(1793451-1793563)
chr1 (523-627)||(2011209-2011313)
chr1 (527-627)||(2020466-2020566)
chr1 (282-382)||(3362205-3362305)
chr1 (63-153)||(3341394-3341484)
chr1 (259-341)||(3349849-3349931)
chr1 (519-590)||(3193366-3193437)
chr1 (519-590)||(3202184-3202255)
chr1 (519-590)||(3211021-3211092)
chr1 (51-102)||(3341079-3341130)
chr1 (270-367)||(3341589-3341687)
chr1 (172-257)||(2010923-2011008)
chr1 (114-214)||(3362049-3362149)
chr1 (269-341)||(9809674-9809746)
chr1 (259-366)||(2947924-2948031)
chr1 (269-367)||(6591971-6592069)
chr1 (510-619)||(2947732-2947841)
chr1 (519-611)||(6591754-6591846)
[»] chr2 (8 HSPs)
chr2 (519-633)||(20953718-20953832)
chr2 (513-633)||(20935174-20935294)
chr2 (513-632)||(20924173-20924292)
chr2 (63-195)||(20953272-20953404)
chr2 (259-414)||(20934933-20935088)
chr2 (63-164)||(39274332-39274433)
chr2 (519-552)||(39274720-39274753)
chr2 (110-214)||(20927397-20927501)
[»] chr4 (2 HSPs)
chr4 (513-633)||(21238223-21238343)
chr4 (173-320)||(21237925-21238072)
[»] chr5 (1 HSPs)
chr5 (513-589)||(17970509-17970585)


Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 8 - 633
Target Start/End: Original strand, 3378966 - 3379591
Alignment:
Q  8 tgaaaagtcttagtcttgaagtggttacaatggctcaagaataaagatgcattcaaaaacatgatatctggctgccctctacttgaagatttggcattgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378966 tgaaaagtcttagtcttgaagtggttacaatggctcaagaataaagatgcattcaaaaacatgatatctggctgccctctacttgaagatttggcattgt 3379065  T
Q  108 tcgaagttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttttaaaattggtggtaaatttgaggatattaactttggaaacaattt 207  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379066 tggaagttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttttaaaattggtggtaaatttgaggatattaactttggaaacaattt 3379165  T
Q  208 ccaattaactaatgtatttgttgatttaaatatttatttgagctctgaaatcaatcaaagaagattgcacggacgctctagcaatttgctcaaatttttt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3379166 ccaattaactaatgtatttgttgatttaaatatttatttgagctctgaaatcaatcaaagaagattgcacggacgctctagcaatttgctcaaatttttc 3379265  T
Q  308 gttcatcgacctcacatgcagagcctagagattggtaattattttttaaaggtataatgcacatacatctgaatgcggaacttaactgtaggagtgacta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3379266 gttcatcgacctcacatgcagagcctagagattggtaattattttttaaaggtataatgcacatacatctgaatgcggaacttaactgtaggagtgacta 3379365  T
Q  408 acctaattcttgtttaatccctactcccggcccctatagatataatatgaatctcttgatttgtaaagtatcaaaaacaatatatactcaattagtgacg 507  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3379366 acctaattcttgtttaatccctactcccggcccctacagatataatatgaatctcttgatttgtaaagtatcaaaaacaatatatactcatttagtgacg 3379465  T
Q  508 ccctcctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttc 607  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3379466 ccctcctgttttgcttcagtatttggctgcaggtgatgtatcagtaaagcttcctacaccttgtatcgatctaagttatctttccttatgtataaacttc 3379565  T
Q  608 aatgtcttgaaggaaatttcggctgc 633  Q
    ||||||||||||||||||||||||||    
T  3379566 aatgtcttgaaggaaatttcggctgc 3379591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 63 - 424
Target Start/End: Original strand, 3372970 - 3373334
Alignment:
Q  63 aaaacatgatatctggctgccctctacttgaagatttggcattgttcgaagttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttt 162  Q
    |||||||||||||||||||||||||||||||  |||||| |||| |  || ||||||| ||| |||||||||||| ||||||||||||||| |    |||    
T  3372970 aaaacatgatatctggctgccctctacttgaccatttggtattgatgaaaattgatggcttctcacaaattaatgttcacgcaccaaatctcagtacttt 3373069  T
Q  163 taaaattggtggtaaatttgaggatattaactttggaaacaatttccaattaactaatgtatttgttgatttaaatatttatttgagctctgaaatcaat 262  Q
    | || ||  |||||||||||||||||||| ||||  ||||| || |||| ||  ||  |||| ||||||||||| ||||||| ||| |||  ||| ||||    
T  3373070 tcaattttatggtaaatttgaggatattagctttcaaaacagttcccaaatatatacagtatatgttgatttaagtatttatctgaactccaaaagcaat 3373169  T
Q  263 caaagaagattgcacggacgctctagcaatttgctcaaattttttgttcatcgacctcacatgcagagcctagagattggtaattattttttaaaggta- 361  Q
    ||||| | |||||| ||| ||||||||||||||||||||||||| |  || | ||||||||| |||  | | ||||||||| |||||||||||||||||     
T  3373170 caaagtaaattgcatggatgctctagcaatttgctcaaatttttcgcccaccaacctcacatacagttcttggagattggttattattttttaaaggtat 3373269  T
Q  362 --taatgcacatacatctgaatgcggaacttaactgtaggagtgactaacctaattcttgtttaa 424  Q
      |||||| ||  ||| ||||||  ||| || ||||||||||||||| |||||||||||||||||    
T  3373270 attaatgctcaagcatatgaatgtagaatttgactgtaggagtgactcacctaattcttgtttaa 3373334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 69 - 324
Target Start/End: Original strand, 2006737 - 2006992
Alignment:
Q  69 tgatatctggctgccctctacttgaagatttggcattgttcgaagttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttttaaaat 168  Q
    |||||||| | |||||||| |||||| ||||| |||||   ||| ||||||||||||| ||||| ||   ||||||||||||||| ||||||||  | ||    
T  2006737 tgatatctagttgccctctgcttgaaaatttgacattgacagaacttgatggtttcacccaaataaacattcacgcaccaaatcttaaggttttggatat 2006836  T
Q  169 tggtggtaaatttgaggatattaactttggaaacaatttccaattaactaatgtatttgttgatttaaatatttatttgagctctgaaatcaatcaaaga 268  Q
      ||||||||||||||||||||| |||||  |||| ||||||||||  | |||||||||||||||||| | | ||||||| |||||||| |||||||||     
T  2006837 ctgtggtaaatttgaggatattagctttgacaacactttccaattagattatgtatttgttgatttaagtttgtatttgaactctgaaagcaatcaaagt 2006936  T
Q  269 agattgcacggacgctctagcaatttgctcaaattttttgttcatcgacctcacat 324  Q
    |||||||| ||| || | ||||| |||||||| ||||||| ||||| || ||||||    
T  2006937 agattgcatggaagccccagcaacttgctcaatttttttgctcatctacatcacat 2006992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 513 - 633
Target Start/End: Original strand, 3362460 - 3362580
Alignment:
Q  513 ctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgt 612  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||| |||| ||  ||||||||||||| ||| ||||| |||     
T  3362460 ctgttttgcttcagtatttggctgcaggtgttgtgccaataaagcttcccacaccttgtatcaatctcagacatctttccttatgcatagacttcgatga 3362559  T
Q  613 cttgaaggaaatttcggctgc 633  Q
    ||||||| |||||| ||||||    
T  3362560 cttgaagaaaattttggctgc 3362580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 243 - 361
Target Start/End: Complemental strand, 4322684 - 4322566
Alignment:
Q  243 atttgagctctgaaatcaatcaaagaagattgcacggacgctctagcaatttgctcaaattttttgttcatcgacctcacatgcagagcctagagattgg 342  Q
    |||||| ||| |||| ||||| ||| |||| ||  ||| | ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  4322684 atttgacctcagaaagcaatccaagtagatcgcctggatgttctagcaatttgctcaaattttttgatcatcgacctcacatacaaagcctagagattgg 4322585  T
Q  343 taattattttttaaaggta 361  Q
    || ||||||||||||||||    
T  4322584 tagttattttttaaaggta 4322566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 481 - 633
Target Start/End: Original strand, 3373416 - 3373568
Alignment:
Q  481 aaaacaatatatactcaattagtgacgccctcctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctg 580  Q
    |||||| ||||| || | |||||||||  || || ||||| || ||||||||||||||| |||||| ||||||||||||||| |||||||||||   ||     
T  3373416 aaaacattatattctgatttagtgacgttcttctattttgttttagtatttggctgcagatgatgtgccagtaaagcttcctgcaccttgtatcagccta 3373515  T
Q  581 agttatctttccttatgtataaacttcaatgtcttgaaggaaatttcggctgc 633  Q
     || | ||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  3373516 tgtgagctttccttatgcataaacttcaatgacttgaaggaaatttcagctgc 3373568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 167 - 313
Target Start/End: Original strand, 2012328 - 2012474
Alignment:
Q  167 attggtggtaaatttgaggatattaactttggaaacaatttccaattaactaatgtatttgttgatttaaatatttatttgagctctgaaatcaatcaaa 266  Q
    |||| |||||||||||||||||||| ||||| ||||| || || ||||| | ||||| |||||||||||| | | | ||||| |||||||| |||||| |    
T  2012328 attgttggtaaatttgaggatattagctttgaaaacacttacctattaaattatgtaattgttgatttaagtttgtgtttgaactctgaaagcaatcata 2012427  T
Q  267 gaagattgcacggacgctctagcaatttgctcaaattttttgttcat 313  Q
    | |||||||| ||| |||| ||||| |||||||| ||||||| ||||    
T  2012428 gtagattgcaaggaagctccagcaacttgctcaatttttttgctcat 2012474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 514 - 630
Target Start/End: Complemental strand, 4334312 - 4334196
Alignment:
Q  514 tgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtc 613  Q
    |||| |||||||||||||||||||||||| | | ||||||||||||||||||||||||||  |||| |||| ||||||||||   ||||||||| ||  |    
T  4334312 tgttatgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattaatctaagttttctttccttaaccataaacttcgataac 4334213  T
Q  614 ttgaaggaaatttcggc 630  Q
     || |||||||||||||    
T  4334212 atggaggaaatttcggc 4334196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 514 - 591
Target Start/End: Complemental strand, 4322424 - 4322347
Alignment:
Q  514 tgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttc 591  Q
    |||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||| |||| ||||||    
T  4322424 tgttctgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtattgatctaagttttctttc 4322347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 627
Target Start/End: Original strand, 2007223 - 2007327
Alignment:
Q  523 tcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaaggaa 622  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||| |  |||||||  ||  ||||||||||| ||| ||| ||||||    
T  2007223 tcagtatttggctgcaggtgctgttccagtaaagcttcctacaccttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaa 2007322  T
Q  623 atttc 627  Q
    |||||    
T  2007323 atttc 2007327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 117 - 363
Target Start/End: Complemental strand, 4334700 - 4334454
Alignment:
Q  117 atggtttcacacaaattaatgctcacgcaccaaatctgaaggtttttaaaattggtggtaaatttgaggatattaactttggaaacaatttccaattaac 216  Q
    ||||||| || |||||||||  ||| ||||||||||| ||| ||||| |||| | |||| ||||||||| | ||| |||||| |||| ||||||||||||    
T  4334700 atggtttaacgcaaattaatattcatgcaccaaatctcaagttttttgaaatcgttggtgaatttgaggttgttacctttggcaacactttccaattaac 4334601  T
Q  217 taatgtatttgttgatttaaatatttatttgagctctgaaatcaatcaaagaagattgcacggacgctctagcaatttgctcaaattttttgttcatcga 316  Q
    ||   || |  || ||| |  | |  | |||| |||| | | ||||||||| ||||  |  ||| |||| |||||||||||||||||||| | |||||||    
T  4334600 taccatagtcatttattcatgtttggagttgacctctaatagcaatcaaagtagatcccctggatgctccagcaatttgctcaaatttttcgatcatcga 4334501  T
Q  317 cctcacatgcagagcctagagattggtaattattttttaaaggtata 363  Q
    |||||||| || ||||||||||| | |  || |||||||||||||||    
T  4334500 cctcacatacaaagcctagagatcgatggtttttttttaaaggtata 4334454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 514 - 579
Target Start/End: Original strand, 3341995 - 3342060
Alignment:
Q  514 tgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatct 579  Q
    |||||||| |||||||||||||||||||  ||| ||||||||||||||||||||||||||| ||||    
T  3341995 tgttttgcctcagtatttggctgcaggtattgtgccagtaaagcttcctacaccttgtatcaatct 3342060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 627
Target Start/End: Original strand, 2012706 - 2012810
Alignment:
Q  523 tcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaaggaa 622  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||  |||| |  |||||||  ||| ||||||||||| | | |||||| |||    
T  2012706 tcagtatttagctgcaggtgttgtgccagtaaagcttcctacaccttgtattaatctaacgtatctttggttaagtataaacttctacgacttgaaagaa 2012805  T
Q  623 atttc 627  Q
    |||||    
T  2012806 atttc 2012810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 519 - 633
Target Start/End: Complemental strand, 3217892 - 3217778
Alignment:
Q  519 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaa 618  Q
    ||||||||||||||| |||||||||||| || ||||| ||||| |||||||||||| || | |||| ||||| | |||| ||||  ||||||| ||||||    
T  3217892 tgcttcagtatttggatgcaggtgatgtgccggtaaaacttccgacaccttgtatcaatttaagttctcttttcatatgcataaggttcaatgacttgaa 3217793  T
Q  619 ggaaatttcggctgc 633  Q
      |||||| ||||||    
T  3217792 acaaattttggctgc 3217778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 516 - 633
Target Start/End: Complemental strand, 6601132 - 6601015
Alignment:
Q  516 ttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtctt 615  Q
    ||||||| ||||||||||||   || | ||||||||||||||||||||| ||||| || ||||| |||||||||||| || | ||||||||| |||  |     
T  6601132 ttttgctccagtatttggctctgggggctgtaccagtaaagcttcctaccccttgcattgatctaagttatctttccatacgcataaacttctatgattc 6601033  T
Q  616 gaaggaaatttcggctgc 633  Q
     ||||||||||| |||||    
T  6601032 aaaggaaatttcagctgc 6601015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 633
Target Start/End: Original strand, 1793451 - 1793563
Alignment:
Q  521 cttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaagg 620  Q
    |||||||||||  ||||||||| ||| |||  || ||||||||||||||||||| || | |  |||||||  ||| | ||||||||||||| ||||||||    
T  1793451 cttcagtatttatctgcaggtgttgtgccaacaatgcttcctacaccttgtatcaatataacatatctttggttaagcataaacttcaatgacttgaagg 1793550  T
Q  621 aaatttcggctgc 633  Q
    ||||||| |||||    
T  1793551 aaatttcagctgc 1793563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 523 - 627
Target Start/End: Original strand, 2011209 - 2011313
Alignment:
Q  523 tcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaaggaa 622  Q
    ||||||||| |||||||||| ||| ||| ||||||||||||||||||||||  |||| |  | ||| |  ||| |||||||||||||||  |||||||||    
T  2011209 tcagtatttagctgcaggtgttgtgccactaaagcttcctacaccttgtattaatctaatgtctctatggttaagtataaacttcaatgagttgaaggaa 2011308  T
Q  623 atttc 627  Q
    |||||    
T  2011309 atttc 2011313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 527 - 627
Target Start/End: Original strand, 2020466 - 2020566
Alignment:
Q  527 tatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaaggaaattt 626  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||  |||| |  |||||||  ||  ||||||||||| ||| ||| ||||||||||    
T  2020466 tatttagctgcaggtgttgttccagtaaagcttcctacaccttgtattaatctaacatatctttggtttagtataaacttctatgactttaaggaaattt 2020565  T
Q  627 c 627  Q
    |    
T  2020566 c 2020566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 282 - 382
Target Start/End: Original strand, 3362205 - 3362305
Alignment:
Q  282 gctctagcaatttgctcaaattttttgttcatcgacctcacatgcagagcctagagattggtaattattttttaaaggtataatgcacatacatctgaat 381  Q
    ||||||||||||||||   |||||| ||||||| ||||||||| || ||||||||||||  | | ||||||||| ||||||||||| | | |||||||||    
T  3362205 gctctagcaatttgcttcgatttttcgttcatctacctcacatacaaagcctagagattcatcactattttttagaggtataatgctcttgcatctgaat 3362304  T
Q  382 g 382  Q
    |    
T  3362305 g 3362305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 3341394 - 3341484
Alignment:
Q  63 aaaacatgatatctggctgccctctacttgaagatttggcattgttcgaagttgatggtttcacacaaattaatgctcacgcaccaaatct 153  Q
    |||||||||||||| ||||||| ||||||||||| ||| |||||   ||| |||||||||| ||||| ||||||  ||| |||||||||||    
T  3341394 aaaacatgatatctagctgccccctacttgaagaattgacattgaaagaaattgatggtttaacacagattaatattcatgcaccaaatct 3341484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 3349849 - 3349931
Alignment:
Q  259 caatcaaagaagattgcacggacgctctagcaatttgctcaaattttttgttcatcgacctcacatgcagagcctagagattg 341  Q
    ||||||| | |||||||| |||  |||||||||||||||||||||||| | ||||| ||||| ||| ||||||||| ||||||    
T  3349849 caatcaaggtagattgcatggattctctagcaatttgctcaaatttttcgatcatctacctcgcatacagagcctaaagattg 3349931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 519 - 590
Target Start/End: Complemental strand, 3193437 - 3193366
Alignment:
Q  519 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatcttt 590  Q
    ||||| ||||||||| |||||||||||| || ||||||||||| |||| ||||||| |||| |||| |||||    
T  3193437 tgcttaagtatttggatgcaggtgatgtgcccgtaaagcttccgacacgttgtatcaatctaagttttcttt 3193366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 519 - 590
Target Start/End: Complemental strand, 3202255 - 3202184
Alignment:
Q  519 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatcttt 590  Q
    ||||| ||||||||| |||||||||||| || ||||||||||| |||| ||||||| |||| |||| |||||    
T  3202255 tgcttaagtatttggatgcaggtgatgtgcccgtaaagcttccgacacgttgtatcaatctaagttttcttt 3202184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 519 - 590
Target Start/End: Complemental strand, 3211092 - 3211021
Alignment:
Q  519 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatcttt 590  Q
    ||||| ||||||||| |||||||||||| || ||||||||||| |||| ||||||| |||| |||| |||||    
T  3211092 tgcttaagtatttggatgcaggtgatgtgcccgtaaagcttccgacacgttgtatcaatctaagttttcttt 3211021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 3341079 - 3341130
Alignment:
Q  51 aagatgcattcaaaaacatgatatctggctgccctctacttgaagatttggc 102  Q
    ||||||||||  ||||||||||||||||||||||||| |||||||| |||||    
T  3341079 aagatgcatttgaaaacatgatatctggctgccctctgcttgaagaattggc 3341130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 367
Target Start/End: Original strand, 3341589 - 3341687
Alignment:
Q  270 gattgcacggacgctctagcaatttgctcaaa-ttttttgttcatcgacctcacatgcagagcctagagattggtaattattttttaaaggtataatgc 367  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||||| |||||| || || | ||||   ||| || |  ||||||||||||||||||||    
T  3341589 gattgcatggatgctctagcaatttgctcaaatttttttgttcatctacctcaaatacataacctattcatttgtcaagattttttaaaggtataatgc 3341687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 172 - 257
Target Start/End: Original strand, 2010923 - 2011008
Alignment:
Q  172 tggtaaatttgaggatattaactttggaaacaatttccaattaactaatgtatttgttgatttaaatatttatttgagctctgaaa 257  Q
    |||||||||||||||||||| ||||  ||||| |||| ||||||||  ||||  ||||||||||| | | ||||||| ||||||||    
T  2010923 tggtaaatttgaggatattagctttataaacactttcaaattaacttgtgtagctgttgatttaagtttgtatttgaactctgaaa 2011008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 3362049 - 3362149
Alignment:
Q  114 ttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttttaaaattggtggtaaatttgaggatattaactttggaaacaatttccaatt 213  Q
    ||||||||||||  |||||||||   |||| ||||||||||||||||  | | ||  ||||| ||||||||||||||| ||||| ||||| ||||| |||    
T  3362049 ttgatggtttcagccaaattaatatccacggaccaaatctgaaggttgctcatatcagtggtgaatttgaggatattagctttgaaaacactttccgatt 3362148  T
Q  214 a 214  Q
    |    
T  3362149 a 3362149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 9809674 - 9809746
Alignment:
Q  269 agattgcacggacgctctagcaatttgctcaaattttttgttcatcgacctcacatgcagagcctagagattg 341  Q
    |||||||| |||  |||||||||||||| ||||||||| | ||||| ||||| ||| ||||||||| ||||||    
T  9809674 agattgcatggattctctagcaatttgcccaaatttttcgatcatctacctcgcatacagagcctaaagattg 9809746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 366
Target Start/End: Complemental strand, 2948031 - 2947924
Alignment:
Q  259 caatcaaagaagattgcacggacgctctagcaatttgctcaaattttttgttcatcgacctcacatgcagagcctagagattggtaattattttttaaag 358  Q
    ||||||| | |||||||| |||  |||||||||||||  ||| ||||||| ||||| ||||| ||| || |||||| |||||| | ||   |||||||||    
T  2948031 caatcaaggtagattgcatggattctctagcaatttggccaatttttttgatcatctacctcgcatacaaagcctacagattgctgatggatttttaaag 2947932  T
Q  359 gtataatg 366  Q
    ||||||||    
T  2947931 gtataatg 2947924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 6592069 - 6591971
Alignment:
Q  269 agattgcacggacgctctagcaatttgctcaaattttttgttcatcgacctcacatgcagagcctagagattggtaattattttttaaaggtataatgc 367  Q
    |||||||| | |||||||||||||||| |  |||||||| |||||| |||||| || |  ||||| ||||||   || |||||||| ||||||||||||    
T  6592069 agattgcatgaacgctctagcaatttggttgaattttttattcatctacctcatatacgcagcctggagattcagaactattttttgaaggtataatgc 6591971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 619
Target Start/End: Complemental strand, 2947841 - 2947732
Alignment:
Q  510 ctcctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaa 609  Q
    |||||||||||||| ||||||||||| |||||   || |||| ||| ||||||||||  ||| || |||| || | | ||| ||| || |||||||||||    
T  2947841 ctcctgttttgctttagtatttggctacaggtatcgtgccagaaaaacttcctacactgtgtgtcaatctaagatctatttgcttgtggataaacttcaa 2947742  T
Q  610 tgtcttgaag 619  Q
    || |||||||    
T  2947741 tgacttgaag 2947732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 611
Target Start/End: Complemental strand, 6591846 - 6591754
Alignment:
Q  519 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatg 611  Q
    |||| ||||||||||||  ||| | ||| |||||| |||||||||| |  || || ||||| |||||| ||||| |||| |||||||||||||    
T  6591846 tgctccagtatttggctttaggggttgtgccagtagagcttcctacccggtgcattgatctaagttatatttccatatgcataaacttcaatg 6591754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 519 - 633
Target Start/End: Original strand, 20953718 - 20953832
Alignment:
Q  519 tgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgtcttgaa 618  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||  |||| || |||||||||||||| ||||||||| |   | | ||    
T  20953718 tgcttcagtatttggctgcaggtgttttgccagtaaagcttcctacaccttgtatttatctaagctatctttccttatgcataaacttcgacaacctaaa 20953817  T
Q  619 ggaaatttcggctgc 633  Q
    |||||||||||||||    
T  20953818 ggaaatttcggctgc 20953832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 513 - 633
Target Start/End: Original strand, 20935174 - 20935294
Alignment:
Q  513 ctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgt 612  Q
    |||||| |||||||||| || ||||||||| | | |||  ||||||||||||||||||||| ||||| ||| ||||||||||  | ||||||||| |||     
T  20935174 ctgtttcgcttcagtatctgactgcaggtgttttgccaaaaaagcttcctacaccttgtatggatctaagtcatctttccttgagcataaacttcgatga 20935273  T
Q  613 cttgaaggaaatttcggctgc 633  Q
    |||||||||||||||||||||    
T  20935274 cttgaaggaaatttcggctgc 20935294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 513 - 632
Target Start/End: Original strand, 20924173 - 20924292
Alignment:
Q  513 ctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgt 612  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||||||| ||||||  |||| |  | ||||||| ||||  |||||||||| |     
T  20924173 ctgttttgcttcagtatttggctgcaggtgtggtgccagtaaagcttcctacactttgtattaatctaacatttctttccatatgcctaaacttcaacga 20924272  T
Q  613 cttgaaggaaatttcggctg 632  Q
    ||||| ||||||||||||||    
T  20924273 cttgacggaaatttcggctg 20924292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 20953272 - 20953404
Alignment:
Q  63 aaaacatgatatctggctgccctctacttgaagatttggcattgttcgaagttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttt 162  Q
    ||||| |||| |||||||||||||| |||||| | |||  |||| | ||||||||||||||||| |||||||||  ||  ||||||||||| ||| ||||    
T  20953272 aaaacttgatctctggctgccctctgcttgaaaaattgaaattgatagaagttgatggtttcacccaaattaatattcgtgcaccaaatctcaagttttt 20953371  T
Q  163 taaaattggtggtaaatttgaggatattaactt 195  Q
      |||||| |||  ||| ||||| |||||||||    
T  20953372 ggaaattgatggcgaatatgagggtattaactt 20953404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 259 - 414
Target Start/End: Original strand, 20934933 - 20935088
Alignment:
Q  259 caatcaaagaagattgcacggacgctctagcaatttgctcaaattttttgttcatcgacctcacatgcagagcctagagattggtaattattttttaaag 358  Q
    ||||||| | |||| || ||||| |||||||||  ||||||||||||| | ||||||||||||||| ||  ||||||  ||| ||  || ||||||||||    
T  20934933 caatcaaggtagatcgcgcggacactctagcaacatgctcaaatttttcgatcatcgacctcacatacaatgcctagtaattcgttcttgttttttaaag 20935032  T
Q  359 gtataatgcacatacatctgaatgcggaacttaactgtaggagtgactaacctaat 414  Q
    |||||| || |  ||||||||||   ||| || ||| ||||| ||||| |||||||    
T  20935033 gtataaagctcgaacatctgaatattgaatttgactttaggactgactcacctaat 20935088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 39274332 - 39274433
Alignment:
Q  63 aaaacatgatatctggctgccctctacttgaagatttggcattgttcgaagttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttt 162  Q
    |||| |||||||| |||||||||||||||||| |||||   ||| | |||  ||||||||| || ||| |||||  ||| ||||||||||||||| ||||    
T  39274332 aaaaaatgatatccggctgccctctacttgaatatttgagtttgatagaacctgatggtttaacccaagttaatattcatgcaccaaatctgaagttttt 39274431  T
Q  163 ta 164  Q
    ||    
T  39274432 ta 39274433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 552
Target Start/End: Original strand, 39274720 - 39274753
Alignment:
Q  519 tgcttcagtatttggctgcaggtgatgtaccagt 552  Q
    |||||||||||||||||||||||||||| |||||    
T  39274720 tgcttcagtatttggctgcaggtgatgtgccagt 39274753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 20927397 - 20927501
Alignment:
Q  110 gaagttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttttaaaattggtggtaaatttgaggatattaactttggaaacaatttcc 209  Q
    ||||||||||| ||||| ||| |||||   |  ||||||||||| ||| |||| |||||   |||| ||| ||||||||||||||||| ||| | |||||    
T  20927397 gaagttgatggcttcacccaagttaatatccgtgcaccaaatctcaagtttttgaaaatcaatggtgaatatgaggatattaactttgaaaatactttcc 20927496  T
Q  210 aatta 214  Q
    |||||    
T  20927497 aatta 20927501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 513 - 633
Target Start/End: Original strand, 21238223 - 21238343
Alignment:
Q  513 ctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctttccttatgtataaacttcaatgt 612  Q
    ||||| ||||||||||||||||||||||||  || ||||||||||||||||||||||||||  |||| ||  ||||||  |||   |||||||||||||     
T  21238223 ctgttctgcttcagtatttggctgcaggtgtcgttccagtaaagcttcctacaccttgtattcatctaagccatcttttgttaaacataaacttcaatga 21238322  T
Q  613 cttgaaggaaatttcggctgc 633  Q
    |||||||||||| ||||||||    
T  21238323 cttgaaggaaatctcggctgc 21238343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 21237925 - 21238072
Alignment:
Q  173 ggtaaatttgaggatattaactttggaaacaatttccaattaactaatgtatttgttgatttaaatatttatttgagctctgaaatcaatcaaagaagat 272  Q
    ||||||||||| ||||||| |||||  || | |||||||||   ||  ||| | |||||||||| | | ||||||| ||||||||  |||||| | ||||    
T  21237925 ggtaaatttgacgatattagctttgacaaaactttccaatttgttacggtactcgttgatttaagtttgtatttgaactctgaaactaatcaacgtagat 21238024  T
Q  273 tgcacggacgctctagcaatttgctcaaattttttgttcatcgacctc 320  Q
    |||| ||| ||||||| | ||||||||| |||||   |||||||||||    
T  21238025 tgcatggatgctctagtagtttgctcaattttttcaatcatcgacctc 21238072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 589
Target Start/End: Original strand, 17970509 - 17970585
Alignment:
Q  513 ctgttttgcttcagtatttggctgcaggtgatgtaccagtaaagcttcctacaccttgtatcgatctgagttatctt 589  Q
    ||||||||||| |||||||||||||||||  ||| |||||| ||||||| ||||||  ||| ||||| |||| ||||    
T  17970509 ctgttttgctttagtatttggctgcaggtattgttccagtagagcttccgacacctattattgatcttagttctctt 17970585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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