View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359-Insertion-2 (Length: 408)
Name: NF5359-Insertion-2
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 408
Target Start/End: Complemental strand, 48349470 - 48349081
Alignment:
| Q |
14 |
atatcatggtcttcaccaaagaagcaactaggctcggatatcattaat----agcctcaacattggaagtaattcgaacatattggaacccataaccatt |
109 |
Q |
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| T |
48349470 |
atatcatggtcttcaccaaagaagcaactaggctcggatatcattaattaatagcctcaccgttggaagtaattcgaacatcttggaacccataaccatt |
48349371 |
T |
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| Q |
110 |
ccaaacatccacaacacacgcaaaacataaaatgagaaatatattcctccacattatcacaaaaaaggggcaagtagctaagacatccactacggctcta |
209 |
Q |
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| T |
48349370 |
ccaaacatccacaacacacgcaaaacataaaatgagaaatatattcctccacattatcacaaaaaaggggcaagtagctaagacatccactacggctcta |
48349271 |
T |
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| Q |
210 |
gggagagaactatatatggtaggattgtcatataaaaaatt-aagagaggtgataggtaaacatccccatgtgttccaaatccaactccaagtatagttg |
308 |
Q |
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| T |
48349270 |
gggagagaactatatatggtaggattgtcatataaaaaattaaacacagcctagacgt----------atgagttccaaatccaactccaagtatagttg |
48349181 |
T |
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| Q |
309 |
gatgtaagaaatattgtgtgagaaaagccagtgataaaccactcttggttgaatattgatcatccaaattagccttccaaacaaagtgtcctccaaagag |
408 |
Q |
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| T |
48349180 |
gatgtaagaaatattgtgtgagaaaagccggtgataaaccactcttggttgaatattgatcatccaaattagccttccaaacaaagtgtcctccaaagag |
48349081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 34278785 - 34278814
Alignment:
| Q |
252 |
agagaggtgataggtaaacatccccatgtg |
281 |
Q |
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| T |
34278785 |
agagaggtgataggtaaacatccccatgtg |
34278814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 281
Target Start/End: Original strand, 8725483 - 8725514
Alignment:
| Q |
250 |
taagagaggtgataggtaaacatccccatgtg |
281 |
Q |
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| T |
8725483 |
taagagaggtgataggtaaacatccccatgtg |
8725514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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