View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5359-Insertion-3 (Length: 369)
Name: NF5359-Insertion-3
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359-Insertion-3 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 4855315 - 4854956
Alignment:
| Q |
8 |
tatttaatctaacaactttttt-atttgaacactctaacttttatacattaattcaacattgtannnnnnngtttcatctctatttttccatcacatcag |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
4855315 |
tatttaatctaacaactttttttatttgaacactctaacttttatacattaattcaacatagtatattttt-tttcatctctatttttccatcacatcaa |
4855217 |
T |
|
| Q |
107 |
taacatatcacatcattctctttatctatttctctctttaaagtgtcaaaatgtttttaaatgtttttaaggagtgtcttagggcgagcactcgattaag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4855216 |
taacatatcacatcattctctttatctatttctct--ttaaagtgtcaaaatatttttaaatgtttttaaggagtatcttagggcgagcactcgattaag |
4855119 |
T |
|
| Q |
207 |
cacctctcatgtactattctatttgaccattagattaagcaaaaagattgactaacatttaaaaacatgtcacacccttagtttcttatttcggaacnnn |
306 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4855118 |
cacctctcatgtactattctatttgacgattagattaagcaaaaagattgactaacatttaaaaacatatcacacccttagtttcttatttcggaacttt |
4855019 |
T |
|
| Q |
307 |
nnnnnnnnnnnnncatatcaatctggattacattttttaggataattgtaactccttattcaa |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4855018 |
tttttttttttttcatatcaatctggattacattttttaggataattgtaactccttattcaa |
4854956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University