View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359-Insertion-5 (Length: 122)
Name: NF5359-Insertion-5
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359-Insertion-5 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 2e-59; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 46466334 - 46466219
Alignment:
| Q |
7 |
agactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttga |
106 |
Q |
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| T |
46466334 |
agactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttga |
46466235 |
T |
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| Q |
107 |
tcgaacaaaccctgcc |
122 |
Q |
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|||||||||||||||| |
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| T |
46466234 |
tcgaacaaaccctgcc |
46466219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 46471539 - 46471424
Alignment:
| Q |
7 |
agactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471539 |
agactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttga |
46471440 |
T |
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| Q |
107 |
tcgaacaaaccctgcc |
122 |
Q |
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|||||||||||||||| |
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| T |
46471439 |
tcgaacaaaccctgcc |
46471424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 46344613 - 46344725
Alignment:
| Q |
8 |
gactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttgat |
107 |
Q |
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| T |
46344613 |
gactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgat |
46344712 |
T |
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| Q |
108 |
cgaacaaaccctg |
120 |
Q |
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| T |
46344713 |
caaacaaaccctg |
46344725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 46451943 - 46451831
Alignment:
| Q |
8 |
gactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttgat |
107 |
Q |
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||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
46451943 |
gactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgat |
46451844 |
T |
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| Q |
108 |
cgaacaaaccctg |
120 |
Q |
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| T |
46451843 |
caaacaaaccctg |
46451831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 46462911 - 46462799
Alignment:
| Q |
8 |
gactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatatttgat |
107 |
Q |
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||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
46462911 |
gactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgat |
46462812 |
T |
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| Q |
108 |
cgaacaaaccctg |
120 |
Q |
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| T |
46462811 |
caaacaaaccctg |
46462799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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