View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5359_high_1 (Length: 870)

Name: NF5359_high_1
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5359_high_1
NF5359_high_1
[»] chr4 (25 HSPs)
chr4 (69-856)||(50114474-50115249)
chr4 (169-306)||(44646526-44646663)
chr4 (169-306)||(49446594-49446732)
chr4 (178-308)||(6316816-6316946)
chr4 (169-306)||(20389993-20390130)
chr4 (17-73)||(50117489-50117545)
chr4 (183-254)||(9802631-9802702)
chr4 (182-306)||(33982393-33982517)
chr4 (172-255)||(42844062-42844145)
chr4 (169-255)||(41468103-41468189)
chr4 (173-255)||(42197054-42197136)
chr4 (173-255)||(49144782-49144864)
chr4 (269-306)||(45900250-45900287)
chr4 (203-255)||(31871090-31871142)
chr4 (269-308)||(8297837-8297876)
chr4 (169-255)||(44647882-44647968)
chr4 (201-304)||(53737827-53737930)
chr4 (269-306)||(38945121-38945158)
chr4 (266-306)||(31072568-31072608)
chr4 (206-254)||(53919888-53919936)
chr4 (270-309)||(51291051-51291090)
chr4 (203-304)||(12329264-12329364)
chr4 (266-304)||(39195824-39195862)
chr4 (206-308)||(5047170-5047272)
chr4 (201-254)||(12103873-12103926)
[»] chr5 (22 HSPs)
chr5 (173-306)||(8247035-8247168)
chr5 (173-304)||(3263717-3263848)
chr5 (172-304)||(10051700-10051832)
chr5 (169-309)||(19692688-19692829)
chr5 (174-307)||(28793302-28793435)
chr5 (172-309)||(35395152-35395290)
chr5 (173-255)||(5356303-5356385)
chr5 (212-291)||(4641494-4641572)
chr5 (201-255)||(26663654-26663708)
chr5 (201-255)||(26935249-26935303)
chr5 (206-308)||(591262-591364)
chr5 (269-308)||(23023599-23023638)
chr5 (203-306)||(31672379-31672483)
chr5 (266-308)||(41583509-41583551)
chr5 (268-300)||(10145311-10145343)
chr5 (270-306)||(10410418-10410454)
chr5 (173-281)||(22473427-22473536)
chr5 (206-306)||(13978670-13978770)
chr5 (169-255)||(1354349-1354435)
chr5 (200-254)||(14042483-14042537)
chr5 (269-307)||(25437976-25438014)
chr5 (172-249)||(142359-142436)
[»] chr1 (30 HSPs)
chr1 (169-308)||(7549809-7549948)
chr1 (169-308)||(40377008-40377147)
chr1 (205-306)||(34445637-34445738)
chr1 (169-304)||(31745408-31745543)
chr1 (172-308)||(45584505-45584641)
chr1 (173-308)||(31652589-31652723)
chr1 (174-307)||(25302039-25302172)
chr1 (171-280)||(5851529-5851636)
chr1 (203-254)||(4039637-4039688)
chr1 (172-281)||(36393477-36393586)
chr1 (173-252)||(12148304-12148383)
chr1 (201-281)||(40203111-40203191)
chr1 (173-305)||(44719150-44719282)
chr1 (172-254)||(50974578-50974660)
chr1 (173-253)||(48947225-48947305)
chr1 (201-254)||(12636341-12636394)
chr1 (269-306)||(39150550-39150587)
chr1 (269-306)||(40570657-40570694)
chr1 (203-255)||(2351402-2351454)
chr1 (269-309)||(3047832-3047872)
chr1 (203-255)||(25095628-25095680)
chr1 (269-309)||(39156226-39156266)
chr1 (269-309)||(39912311-39912351)
chr1 (269-308)||(16113885-16113924)
chr1 (200-254)||(5115638-5115692)
chr1 (203-253)||(33744170-33744220)
chr1 (269-307)||(34861313-34861351)
chr1 (203-253)||(40570711-40570761)
chr1 (203-249)||(45584744-45584790)
chr1 (200-253)||(31043022-31043075)
[»] chr3 (21 HSPs)
chr3 (169-304)||(52340122-52340257)
chr3 (169-248)||(18399160-18399239)
chr3 (169-307)||(27968167-27968303)
chr3 (172-308)||(38704954-38705090)
chr3 (173-308)||(34758895-34759030)
chr3 (170-242)||(7754772-7754844)
chr3 (172-255)||(4033050-4033132)
chr3 (203-253)||(40546348-40546398)
chr3 (169-303)||(54911999-54912133)
chr3 (203-308)||(28434477-28434581)
chr3 (203-254)||(55110047-55110098)
chr3 (269-306)||(37708405-37708442)
chr3 (269-309)||(52308981-52309021)
chr3 (266-304)||(4305240-4305278)
chr3 (173-255)||(30687084-30687166)
chr3 (201-255)||(38388731-38388785)
chr3 (203-253)||(46711949-46711999)
chr3 (267-300)||(4305117-4305150)
chr3 (270-307)||(17517520-17517557)
chr3 (201-254)||(19898135-19898188)
chr3 (270-307)||(29611987-29612024)
[»] chr8 (14 HSPs)
chr8 (169-308)||(31206276-31206415)
chr8 (173-253)||(38956905-38956985)
chr8 (169-255)||(5020055-5020139)
chr8 (173-254)||(5217763-5217844)
chr8 (174-281)||(45368729-45368836)
chr8 (269-309)||(28207589-28207629)
chr8 (265-307)||(7262119-7262161)
chr8 (269-308)||(1876583-1876622)
chr8 (270-309)||(18808868-18808907)
chr8 (269-308)||(20279656-20279695)
chr8 (269-308)||(21066283-21066322)
chr8 (270-308)||(24869380-24869418)
chr8 (269-307)||(31264964-31265002)
chr8 (267-308)||(7574278-7574319)
[»] chr2 (19 HSPs)
chr2 (174-305)||(20683003-20683134)
chr2 (169-307)||(18053019-18053156)
chr2 (175-302)||(34546275-34546402)
chr2 (169-304)||(44941082-44941216)
chr2 (169-252)||(42945015-42945098)
chr2 (173-307)||(8773678-8773812)
chr2 (201-255)||(2825989-2826043)
chr2 (201-255)||(4238358-4238412)
chr2 (173-255)||(8789875-8789957)
chr2 (203-304)||(6761761-6761862)
chr2 (201-307)||(3882583-3882689)
chr2 (269-308)||(5962066-5962105)
chr2 (269-308)||(15816805-15816844)
chr2 (270-309)||(25622499-25622538)
chr2 (269-306)||(13538363-13538401)
chr2 (202-240)||(19495237-19495275)
chr2 (205-254)||(6334709-6334758)
chr2 (200-253)||(8964413-8964466)
chr2 (270-307)||(32859752-32859789)
[»] chr7 (21 HSPs)
chr7 (173-309)||(47507575-47507711)
chr7 (174-255)||(48137802-48137883)
chr7 (169-300)||(38452146-38452276)
chr7 (205-308)||(8169997-8170100)
chr7 (173-255)||(43670430-43670512)
chr7 (169-302)||(30412921-30413053)
chr7 (177-255)||(2964068-2964146)
chr7 (201-255)||(5248114-5248168)
chr7 (201-254)||(2741193-2741246)
chr7 (269-306)||(27123242-27123279)
chr7 (201-253)||(1360557-1360609)
chr7 (269-309)||(27766787-27766827)
chr7 (269-309)||(34299844-34299884)
chr7 (201-281)||(42493701-42493782)
chr7 (172-255)||(16878726-16878809)
chr7 (269-300)||(17157739-17157770)
chr7 (203-250)||(42890298-42890345)
chr7 (203-305)||(7596181-7596283)
chr7 (269-306)||(28770445-28770482)
chr7 (265-306)||(45375444-45375485)
chr7 (169-238)||(46684557-46684626)
[»] chr6 (7 HSPs)
chr6 (172-299)||(12383022-12383149)
chr6 (203-301)||(7465451-7465548)
chr6 (175-304)||(31702747-31702874)
chr6 (267-308)||(35229258-35229299)
chr6 (177-255)||(35241430-35241509)
chr6 (269-307)||(31854761-31854799)
chr6 (270-303)||(34232057-34232090)


Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 69 - 856
Target Start/End: Complemental strand, 50115249 - 50114474
Alignment:
Q  69 cagaaaagattagagagaaagttgcatgattcgttttgttgcaaatgtaattgattacaccactttctcttgtgaaagtggacataaacaccaaaactat 168  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50115249 cagaaaaaattagagagaaagttgcatgattcgttttgttgcaaatgtaattgattacaccactttctcttgtgaaagtggacataaacaccaaaactat 50115150  T
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||      
T  50115149 aggcctttaaatggtaacttatcataata---tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttcttttgaaa-- 50115055  T
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctttnnnnnnncatcatccctatatatcaagacattacatacgatccacatatcataataagc 368  Q
          ||||||| ||| |||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50115054 ------gagtgccccggaggcactcgttaacaagaccctttaaaaaaacatcatccctatatatcaaaacattacatacgatccacatatcataataagc 50114961  T
Q  369 aggttgtttattccaattattattatggcaaccttaatacgttataaatagggtttgacaatgggtttggcactgatagatctagagattaacat---tt 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||   ||    
T  50114960 aggttgtttattccaattattattatggcaaccttaatacgttataaatagggtttgacaatgggtttggcact-------ctagagattaacatcattt 50114868  T
Q  466 tcatacaccatttgacatatacaaataggttgctgttttataatgtaaacaattatgttacagtcgattatgtaaataaaatccttaaagcaaattgtta 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50114867 tcatacaccatttgacatatacaaataggttgctgttttataatgtaaacaattatgttacagtcgattatgtaaataaaatccttaaagcaaattgtta 50114768  T
Q  566 tctttgtatacgtaactatgattatatattaaatttgcggatgaagagtgcgaataacaactaaataatacgataagcaaagac--nnnnnnnncattaa 663  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||          ||||||    
T  50114767 tctttgtatacgtaactatgattatatattaaatttgcagatgaagagtgcgaataacaactaaataatacgataagcaaagacttttttttttcattaa 50114668  T
Q  664 ctgccgaaatagatagtatcgtcatcgacgattacataaac-ttcctttgattgnnnnnnnnnnnnnnnnnnncaaacgacgcttgcacacatatagctt 762  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||                   |||||||||||||||||||||||||||    
T  50114667 ctgccgaaatagatagtattgtcatcgacgattacataaactttcctttgattgaaaaaagaaaaaagaaaaacaaacgacgcttgcacacatatagctt 50114568  T
Q  763 tcaactccataacattacaaatttgctgcatcaatcccaaccacacccacagcaaccaacactaagcatgaaccaccttgaagtagagaataat 856  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  50114567 tcaactccataacattataaatttgctgcatcaatcccaaccacacccacggcaaccaacactaagcatgaaccaccttgaagtagagagtaat 50114474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 169 - 306
Target Start/End: Original strand, 44646526 - 44646663
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    |||| ||| ||| |||||||||||| | ||  |||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||       ||||||    
T  44646526 aggcttttgaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttattataaaatagtttcttcttttgaaatc 44646625  T
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  44646626 cttaaagaatgccccgggggcactcgttaacaagaccc 44646663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 169 - 306
Target Start/End: Original strand, 49446594 - 49446732
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgac-ttttttataaaataatttcnnnnnnngaaat 267  Q
    |||||||||||| |||||||||||| | ||  |||||||||||||||| |||||||||||| |||||| ||||||||||||||| |||       | |||    
T  49446594 aggcctttaaatagtaacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttcttcttttggaat 49446693  T
Q  268 ccttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    |||||||||||||| || ||||||| |||||||||||||    
T  49446694 ccttaaagagtgccccgagggcacttgttaacaagaccc 49446732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 6316816 - 6316946
Alignment:
Q  178 aatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagag 277  Q
    |||| ||||||||||| | ||  |||||||||||||||| | ||||| ||||||||| |||||||||||||| |||||       |||||| ||||||||    
T  6316816 aatgataacttatcatgaaaatatgtgtaatcaatgcattgaaaatcaaaatctttgccttttttataaaattatttcttcttttgaaatctttaaagag 6316915  T
Q  278 tgcctcgggggcactcgttaacaagaccctt 308  Q
    |||| ||| ||||||||||||||||||||||    
T  6316916 tgccccggaggcactcgttaacaagaccctt 6316946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 169 - 306
Target Start/End: Complemental strand, 20390130 - 20389993
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    |||| |||||||||||||||||||| | ||||||||| |||||||||| | ||||| |||| ||||||||||||||||||| |||||       | |||     
T  20390130 aggcttttaaatggtaacttatcatgaaaagttgtgtgatcaatgcatcgaaaatcaaaatatttgacttttttataaaattatttcttgttttggaatt 20390031  T
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    |||||||| |||| ||||  ||||||||||||||||||    
T  20390030 cttaaagaatgccccgggaacactcgttaacaagaccc 20389993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 50117545 - 50117489
Alignment:
Q  17 aacataaaaccacttaatgttcatatatcaactcaatgtatccatgagaatacagaa 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50117545 aacataaaaccacttaatgttcatatatcaactcaatgtatccatgagaatacagaa 50117489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 254
Target Start/End: Original strand, 9802631 - 9802702
Alignment:
Q  183 taacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    ||||||||||||| ||  ||||||||||||| || ||||||| |||| ||||||||||||||||||||||||    
T  9802631 taacttatcataaaaatatgtgtaatcaatgtatcggaaatcaaaatatttgacttttttataaaataattt 9802702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 306
Target Start/End: Complemental strand, 33982517 - 33982393
Alignment:
Q  182 gtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcc 281  Q
    |||||||||||| | ||  | ||||||||||| || |||||||||||| ||| ||||||||||||||||||||        |||||||||||||| | ||    
T  33982517 gtaacttatcatgaaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataattttttcttttgaaatccttaaagaatacc 33982418  T
Q  282 tcgggggcactcgttaacaagaccc 306  Q
     ||| | |||||||| |||||||||    
T  33982417 ccggagccactcgttcacaagaccc 33982393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 42844145 - 42844062
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||| ||||| |||| || | ||  |||||||||||||||| | |||||||||| ||||| |||||||||||||||||||    
T  42844145 cctttaaagggtaatttattatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttc 42844062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 41468189 - 41468103
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||||||||||||||| |||||| ||    ||||||||||||||  ||||||| ||| ||| |||||||||||| ||||||||    
T  41468189 aggcctttaaatggtaacttttcataaaaatacatgtaatcaatgcatcagaaatcggaatatttaacttttttataacataatttc 41468103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 42197136 - 42197054
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||||||||| ||||||||| ||  ||||||||||||| || | ||||| |||| ||||| ||||| |||||||||||||    
T  42197136 ctttaaatggtaatttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatatttgattttttaataaaataatttc 42197054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 49144864 - 49144782
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||||||||| || |||||| ||  | |||||||||||||| | ||||| |||| ||| |||||||||||||||||||||    
T  49144864 ctttaaatggtaatttttcataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttc 49144782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 45900250 - 45900287
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45900250 cttaaagagtgcctcgggggcactcgttaacaagaccc 45900287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 31871090 - 31871142
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||||||||| |||||| ||||| ||| |||||||||||||||||||||    
T  31871090 tgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttc 31871142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 8297876 - 8297837
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8297876 cttaaagagtgccccgggggcactcgttaacaagaccctt 8297837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 44647882 - 44647968
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||| ||| |||||||||||| | ||  |||||||| ||||||| |||||| ||||| ||||| ||| |||||||||| ||||    
T  44647882 aggcctttgaatagtaacttatcatgaaaatatgtgtaattaatgcatcggaaattgaaatatttgattttattataaaatagtttc 44647968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 53737827 - 53737930
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaaca 300  Q
    |||||| ||||||||| |||||||||||| ||||| ||||||| | |||||||||       | ||  |||||||||||||  |||||||||||||| ||    
T  53737827 tgtgtattcaatgcattggaaatcgaaatatttgaattttttaaagaataatttcttattttggaacgcttaaagagtgccctgggggcactcgttagca 53737926  T
Q  301 agac 304  Q
    ||||    
T  53737927 agac 53737930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 38945121 - 38945158
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  38945121 cttaaagagtgccgcgggggcactcgttaacaagaccc 38945158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 31072568 - 31072608
Alignment:
Q  266 atccttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  31072568 atccttaaagagtggcccgggggcactcgttaacaagaccc 31072608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 53919936 - 53919888
Alignment:
Q  206 aatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    ||||||||||| |||||| ||||| ||||||||||||||| ||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataattt 53919888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 51291090 - 51291051
Alignment:
Q  270 ttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    ||||||||||||||| ||||| ||||||||||||||||||    
T  51291090 ttaaagagtgcctcgagggcattcgttaacaagacccttt 51291051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 12329364 - 12329264
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgactttttt-ataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaa 301  Q
    ||||||||||||||  ||||| ||||| |||||||||||| ||  |||||||||       ||||| |||||||||||| |  |||||||||||||||||    
T  12329364 tgtaatcaatgcatttgaaattgaaatatttgactttttttatggaataatttctccttttgaaatgcttaaagagtgcat--ggggcactcgttaacaa 12329267  T
Q  302 gac 304  Q
    |||    
T  12329266 gac 12329264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 39195824 - 39195862
Alignment:
Q  266 atccttaaagagtgcctcgggggcactcgttaacaagac 304  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  39195824 atccttaaagagtgccttgagggcactcgttaacaagac 39195862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 308
Target Start/End: Complemental strand, 5047272 - 5047170
Alignment:
Q  206 aatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagacc 305  Q
    ||||||||||| |||||| ||||| |||||||||| ||   |||||||||       ||||||||||| |||||||    |||||||||||||||| |||    
T  5047272 aatcaatgcattggaaattgaaatttttgacttttgtaatgaataatttctttattagaaatccttaatgagtgcccttagggcactcgttaacaaaacc 5047173  T
Q  306 ctt 308  Q
    |||    
T  5047172 ctt 5047170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 12103873 - 12103926
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    |||||||||||||  | |||||||||| | |||||||||||||| |||||||||    
T  12103873 tgtgtaatcaatgttttggaaatcgaattatttgacttttttatgaaataattt 12103926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 3e-35; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 173 - 306
Target Start/End: Complemental strand, 8247168 - 8247035
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 272  Q
    ||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||       | ||||||||    
T  8247168 ctttaaatggtaacttatcatgaaaagttgtataatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttcttttggaatcctta 8247069  T
Q  273 aagagtgcctcgggggcactcgttaacaagaccc 306  Q
    ||||||| | ||||||||||||||||||||||||    
T  8247068 aagagtgtcacgggggcactcgttaacaagaccc 8247035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 173 - 304
Target Start/End: Complemental strand, 3263848 - 3263717
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 272  Q
    ||||||||||||||||||||| | ||  |||||||||||||||| |||||||||||||||||||||||||||||||| |||||       ||||| ||||    
T  3263848 ctttaaatggtaacttatcattaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttcttttgaaattctta 3263749  T
Q  273 aagagtgcctcgggggcactcgttaacaagac 304  Q
    ||||||||| |||  |||||||||||||||||    
T  3263748 aagagtgccccggaagcactcgttaacaagac 3263717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 172 - 304
Target Start/End: Complemental strand, 10051832 - 10051700
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 271  Q
    ||||||||||||||||||| || | ||||||| |||||||||||| ||||||  |||| ||||||||||||||||||| |||||        ||||||||    
T  10051832 cctttaaatggtaacttattatgaaaagttgtataatcaatgcatcggaaatataaatatttgacttttttataaaattatttcttcttttaaaatcctt 10051733  T
Q  272 aaagagtgcctcgggggcactcgttaacaagac 304  Q
    |||||||||||  ||| ||||||||||||||||    
T  10051732 aaagagtgccttagggacactcgttaacaagac 10051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 19692829 - 19692688
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgactttttt-ataaaataatttcnnnnnnngaaat 267  Q
    |||||||||||| |||||||||||| | |   |||||||||||||||| | |||||||||| |||||||||||| ||||| |||||||       |||||    
T  19692829 aggcctttaaattgtaacttatcatcaaattatgtgtaatcaatgcattgaaaatcgaaatatttgactttttttataaattaatttcttcttttgaaat 19692730  T
Q  268 ccttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    | |||||||||||| ||||| ||||||||||||| |||||||    
T  19692729 ctttaaagagtgccccggggacactcgttaacaaaacccttt 19692688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 28793435 - 28793302
Alignment:
Q  174 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaa 273  Q
    |||||||||||| ||||||||| ||  | |||||| ||||||| |||||||||||| ||||||||||||||||||| |||||       | |||||||||    
T  28793435 tttaaatggtaaattatcataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttcttttggaatccttaa 28793336  T
Q  274 agagtgcctcgggggcactcgttaacaagaccct 307  Q
    |||| ||  |||  ||||||||||||||||||||    
T  28793335 agagcgcaccggaagcactcgttaacaagaccct 28793302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 35395290 - 35395152
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 271  Q
    ||||| ||||| |||||||||| | ||  |||||||||||||||| | ||||  |||| |||||||||||||||||||| ||||       | |||||||    
T  35395290 ccttttaatggcaacttatcatgaaaatatgtgtaatcaatgcatcgaaaattaaaatatttgacttttttataaaatagtttcttcttttggaatcctt 35395191  T
Q  272 aaagagt-gcctcgggggcactcgttaacaagacccttt 309  Q
    ||||||| ||||| |||| ||||||||||||||||||||    
T  35395190 aaagagtagcctccggggtactcgttaacaagacccttt 35395152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 5356303 - 5356385
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||||||||||||||||| | ||  |||||||||||||||| | |||||||||| |||||| |||||||||| |||||||    
T  5356303 ctttaaatggtaacttatcatgaaaatatgtgtaatcaatgcatcgaaaatcgaaatatttgacgtttttataaattaatttc 5356385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 4641494 - 4641572
Alignment:
Q  212 tgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcac 291  Q
    ||||| |||||||||||||||||||||||||| ||||||||||        |||||||||||||||||||||| ||||||    
T  4641494 tgcattggaaatcgaaatctttgactttttta-aaaataatttattcattagaaatccttaaagagtgcctcgagggcac 4641572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 26663708 - 26663654
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||    
T  26663708 tgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttc 26663654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 26935303 - 26935249
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||||||| ||| |||||||||||| ||||||||||||| |||||||||||    
T  26935303 tgtgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttc 26935249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 206 - 308
Target Start/End: Original strand, 591262 - 591364
Alignment:
Q  206 aatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagacc 305  Q
    ||||||||||| |||||| ||| | || |||||||||| | |||||||||       ||||||||||||||||| ||   ||||||||||||||||||||    
T  591262 aatcaatgcattggaaattgaagttttcgacttttttaaagaataatttctttattagaaatccttaaagagtgtctttagggcactcgttaacaagacc 591361  T
Q  306 ctt 308  Q
    |||    
T  591362 ctt 591364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 23023638 - 23023599
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  23023638 cttaaagagtgccccgggggcactcgttaacaagaccctt 23023599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 31672483 - 31672379
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgactttttt-ataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaa 301  Q
    |||||||||||||| |||||| ||||  |||||||||||| ||  |||| ||||       | ||| ||||||||||||| |||||||||||||||||||    
T  31672483 tgtaatcaatgcattggaaattgaaacatttgactttttttatggaatagtttctccttttggaatgcttaaagagtgccccgggggcactcgttaacaa 31672384  T
Q  302 gaccc 306  Q
    |||||    
T  31672383 gaccc 31672379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 41583551 - 41583509
Alignment:
Q  266 atccttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  41583551 atccttaaagagtgacccgggggcactcgttaacaagaccctt 41583509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 10145343 - 10145311
Alignment:
Q  268 ccttaaagagtgcctcgggggcactcgttaaca 300  Q
    |||||||||||||||||||||||||||||||||    
T  10145343 ccttaaagagtgcctcgggggcactcgttaaca 10145311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 10410454 - 10410418
Alignment:
Q  270 ttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    |||||||||||| ||||||||||||||||||||||||    
T  10410454 ttaaagagtgccccgggggcactcgttaacaagaccc 10410418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 22473536 - 22473427
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga-cttttttataaaataatttcnnnnnnngaaatcctt 271  Q
    ||||||||||||||||||| | | ||  ||||||||||||||||  |||||  |||| |||||  |||||||||||||||||||       |||||||||    
T  22473536 ctttaaatggtaacttatcgtgaaaatatgtgtaatcaatgcatcagaaattaaaatatttgattttttttataaaataatttcttcttttgaaatcctt 22473437  T
Q  272 aaagagtgcc 281  Q
    ||||| ||||    
T  22473436 aaagaatgcc 22473427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 13978670 - 13978770
Alignment:
Q  206 aatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagacc 305  Q
    ||||||||||| |||||| ||| | ||| |||||||||  ||||||||||       |||||||||||| |||||||   || |||||||||||||||||    
T  13978670 aatcaatgcattggaaattgaagtttttaacttttttaagaaataatttctttattggaaatccttaaaaagtgcctttaggacactcgttaacaagacc 13978769  T
Q  306 c 306  Q
    |    
T  13978770 c 13978770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 1354349 - 1354435
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||||||| ||||| ||||||| | ||  | | ||||||||  ||  ||||||||||| ||| |||||||||||||||||||||    
T  1354349 aggcctttaaaaggtaaattatcatgaaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttc 1354435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 14042537 - 14042483
Alignment:
Q  200 ttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    |||| |||||||||||| ||||||| |||| ||||||||||||| | ||||||||    
T  14042537 ttgtataatcaatgcattggaaatcaaaatatttgacttttttaaataataattt 14042483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 25437976 - 25438014
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccct 307  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  25437976 cttaaagagtgtcccgggggcactcgttaacaagaccct 25438014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 142359 - 142436
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaat 249  Q
    ||||||||  |||||||||||||| |   ||||||||||||| ||  ||||| ||||| ||||| |||||||||||||    
T  142359 cctttaaaatgtaacttatcataaaattatgtgtaatcaatgtatcagaaattgaaatatttgatttttttataaaat 142436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 169 - 308
Target Start/End: Complemental strand, 7549948 - 7549809
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    |||||||||||| |||||||||||| | ||||||||| ||||||||||  ||||||||||| ||||||||||||||||||| |||||       |||||     
T  7549948 aggcctttaaattgtaacttatcatgaaaagttgtgtgatcaatgcatcagaaatcgaaatatttgacttttttataaaattatttcttcttttgaaatt 7549849  T
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||||||| | || || ||||||||||||||||||||    
T  7549848 cttaaagagtgtcccgaggacactcgttaacaagaccctt 7549809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 169 - 308
Target Start/End: Complemental strand, 40377147 - 40377008
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||| || || |||| |||| ||||||||||||||||||| |||||       | ||||    
T  40377147 aggcctttaaatggtaatttatcatgaaaagttgtgtaatcaatgaattgggaatcaaaatatttgacttttttataaaattatttcttcttttggaatc 40377048  T
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    |||||||||||||   ||||||||||||||||||||||||    
T  40377047 cttaaagagtgcccaaggggcactcgttaacaagaccctt 40377008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 34445738 - 34445637
Alignment:
Q  205 taatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagac 304  Q
    |||||||||||| |||||||||||| ||||||||||||||||| |||||||       | ||||||||||||||||  ||||||||||||||||||||||    
T  34445738 taatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgctccgggggcactcgttaacaagac 34445639  T
Q  305 cc 306  Q
    ||    
T  34445638 cc 34445637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 31745408 - 31745543
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    |||||||||||| |||||||||||||| ||  |||||||||||||||| |  ||||||||| ||||||||| ||||||||||||||          ||||    
T  31745408 aggcctttaaatagtaacttatcataaaaatatgtgtaatcaatgcatcgagaatcgaaatatttgactttattataaaataatttattcttttagaatc 31745507  T
Q  269 cttaaagagtgcctcgggggcactcgttaacaagac 304  Q
     |||||||||||||||| |||||| |||||||||||    
T  31745508 tttaaagagtgcctcggaggcactagttaacaagac 31745543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 172 - 308
Target Start/End: Complemental strand, 45584641 - 45584505
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 271  Q
    ||||||||  |||||||||||| | ||  |||||||||||| |||  |||||  |||| ||| |||||||||||||||||||||       | |||||||    
T  45584641 cctttaaaaagtaacttatcatgaaaatatgtgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatcctt 45584542  T
Q  272 aaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    |||||||||| |||||||| |||||||||||||||||    
T  45584541 aaagagtgccccgggggcattcgttaacaagaccctt 45584505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 173 - 308
Target Start/End: Complemental strand, 31652723 - 31652589
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 272  Q
    |||||||||||||| |||||| | ||  |||||||||| ||||| ||||||  |||| |||||||||||||||||||||||||       ||||||||||    
T  31652723 ctttaaatggtaacctatcatgaaaatatgtgtaatcattgcatcggaaattaaaatatttgacttttttataaaataatttc-ttttttgaaatcctta 31652625  T
Q  273 aagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    |||||| |  ||| | ||||||||||||||||||||    
T  31652624 aagagttctccggagacactcgttaacaagaccctt 31652589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 25302172 - 25302039
Alignment:
Q  174 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaa 273  Q
    |||||||||||||||||||| | ||  ||||||||||||| || | |||||||||||||||||||||||||| ||| ||||        | |||||||||    
T  25302172 tttaaatggtaacttatcatgaaaatatgtgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttggaatccttaa 25302073  T
Q  274 agagtgcctcgggggcactcgttaacaagaccct 307  Q
    ||||||    |||| |||||||||||||||||||    
T  25302072 agagtgttctggggacactcgttaacaagaccct 25302039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 5851636 - 5851529
Alignment:
Q  171 gcctttaaatggtaacttatcat-aataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcc 269  Q
    ||||||||||||||||||||||| ||||   | |||||||||||||| | |||||||||||||||| ||||||||||||| |||||       |||||||    
T  5851636 gcctttaaatggtaacttatcatgaata---tttgtaatcaatgcatcgaaaatcgaaatctttgatttttttataaaattatttcttcttttgaaatcc 5851540  T
Q  270 ttaaagagtgc 280  Q
    |||||||||||    
T  5851539 ttaaagagtgc 5851529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 4039637 - 4039688
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  4039637 tgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataattt 4039688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 36393586 - 36393477
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 271  Q
    |||||||||||||||||||||| | ||   ||||||||||||||| | ||||| |||| ||||| |||||||||| |||||||        |||||||||    
T  36393586 cctttaaatggtaacttatcatgaaaatacgtgtaatcaatgcatcgaaaatcaaaatatttgatttttttataacataattttttcttttgaaatcctt 36393487  T
Q  272 aaagagtgcc 281  Q
    ||||||||||    
T  36393486 aaagagtgcc 36393477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 12148304 - 12148383
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataat 252  Q
    ||||||||||||||||||||| | ||  ||||||| |||||||| ||||||| |||| ||| ||||||| ||||||||||    
T  12148304 ctttaaatggtaacttatcatgaaaatatgtgtaaccaatgcattggaaatcaaaatattttactttttcataaaataat 12148383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 40203111 - 40203191
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcc 281  Q
    |||||||||||||||| |||||| ||||| |||||||||||||| ||||||||||       | |||||||||||||||||    
T  40203111 tgtgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgtaatccttaaagagtgcc 40203191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 44719282 - 44719150
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 272  Q
    ||||||||||||| ||||||| | ||  |||||||||| |||||  ||||||| ||| ||| |||||||||||||||||| |        | ||||||||    
T  44719282 ctttaaatggtaatttatcatgaaaatgtgtgtaatcattgcatcagaaatcggaatatttaacttttttataaaataatatatttttttggaatcctta 44719183  T
Q  273 aagagtgcctcgggggcactcgttaacaagacc 305  Q
    || |||| | ||||| |||||||||||||||||    
T  44719182 aaaagtgtcccggggacactcgttaacaagacc 44719150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 50974578 - 50974660
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    |||||||||||||| ||||||| | ||  | |||||| ||||||| | |||| ||||| ||||||||||||||||||||||||    
T  50974578 cctttaaatggtaatttatcatgaaaatatatgtaattaatgcatcgaaaattgaaatatttgacttttttataaaataattt 50974660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 48947305 - 48947225
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 253  Q
    |||||||||||||||| | || | || ||||||||||| ||||| |||||| |||| ||||||| |||||| |||||||||    
T  48947305 ctttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataatt 48947225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 12636341 - 12636394
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    ||||||||||||| |||||||||||||||  |||||||||| ||||||| ||||    
T  12636341 tgtgtaatcaatgtataggaaatcgaaatacttgactttttaataaaattattt 12636394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 39150587 - 39150550
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  39150587 cttaaagagtgccccgggggcactcgttaacaagaccc 39150550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 40570694 - 40570657
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  40570694 cttaaagagtgccccgggggcactcgttaacaagaccc 40570657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 2351454 - 2351402
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||||||||| ||||||  |||| |||||||||||||| ||||||||||    
T  2351454 tgtaatcaatgcatcggaaattaaaatgtttgacttttttatgaaataatttc 2351402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 3047872 - 3047832
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
T  3047872 cttaaagagtgccccgggggcactctttaacaagacccttt 3047832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 25095680 - 25095628
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||||||||| | |||| ||||| |||||||||||||| ||||||||||    
T  25095680 tgtaatcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttc 25095628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 39156266 - 39156226
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  39156266 cttaaagagtgtctcaggggcactcgttaacaagacccttt 39156226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 39912311 - 39912351
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  39912311 cttaaagagtgtcccgggggcactcgttaacaagacccttt 39912351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 16113924 - 16113885
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  16113924 cttaaagagtgccccggaggcactcgttaacaagaccctt 16113885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 5115638 - 5115692
Alignment:
Q  200 ttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    ||||||||| ||||||| |||||| ||||| ||| |||||||||||| |||||||    
T  5115638 ttgtgtaattaatgcattggaaattgaaatatttaacttttttataacataattt 5115692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 33744170 - 33744220
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 253  Q
    |||||||||||||| | |||||||||| ||||||||||| | |||||||||    
T  33744170 tgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataatt 33744220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 34861313 - 34861351
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccct 307  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  34861313 cttaaagagtgcccccggggcactcgttaacaagaccct 34861351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 40570761 - 40570711
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 253  Q
    |||||||||||  |||||||||||||| ||||||||||||| | |||||||    
T  40570761 tgtaatcaatgtctaggaaatcgaaatgtttgacttttttaaagaataatt 40570711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 45584790 - 45584744
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaat 249  Q
    |||||||||||||| ||||||| |||| ||||| |||||||||||||    
T  45584790 tgtaatcaatgcatcggaaatcaaaatatttgatttttttataaaat 45584744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 31043075 - 31043022
Alignment:
Q  200 ttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 253  Q
    ||||||||||||||||| | |||| |||| ||||||| |||||| |||||||||    
T  31043075 ttgtgtaatcaatgcattgaaaattgaaaactttgacatttttaaaaaataatt 31043022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 52340122 - 52340257
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttga-cttttttataaaataatttcnnnnnnngaaat 267  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||  ||||||||||||| |||||       | |||    
T  52340122 aggcctttaaatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatctttgattttttttataaaattatttcttcctttggaat 52340221  T
Q  268 ccttaaagagtgcctcgggggcactcgttaacaagac 304  Q
    |||||||||||||||| || | |||||||||||||||    
T  52340222 ccttaaagagtgcctc-ggagaactcgttaacaagac 52340257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 18399160 - 18399239
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaa 248  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  18399160 aggcttttaaatggtaacttatcatgaaaagttgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaa 18399239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 169 - 307
Target Start/End: Complemental strand, 27968303 - 27968167
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatc-aatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaat 267  Q
    ||||||||||||||||||||||||| | ||  ||||||||| ||||||| | ||||| ||||||||||||||||||| |||| |||||       | |||    
T  27968303 aggcctttaaatggtaacttatcatgaaaatatgtgtaatcaaatgcatcgaaaatcaaaatctttgacttttttat-aaattatttcttcttttggaat 27968205  T
Q  268 ccttaaagagtgcctcgggggcactcgttaacaagaccct 307  Q
    ||||||| ||||  || |||||||||||||||||||||||    
T  27968204 ccttaaaaagtg--tccggggcactcgttaacaagaccct 27968167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 38704954 - 38705090
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 271  Q
    ||||||||||  || ||||||||  ||  |||||||||||||||| ||||||| |||| |||||| |||||||||||||||||          ||| |||    
T  38704954 cctttaaatgacaatttatcatacaaatatgtgtaatcaatgcatcggaaatcaaaatatttgacatttttataaaataattttttctttttgaattctt 38705053  T
Q  272 aaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||| | |||||||||||||||||||||||||||    
T  38705054 aaagagtacttcgggggcactcgttaacaagaccctt 38705090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 308
Target Start/End: Complemental strand, 34759030 - 34758895
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 272  Q
    |||||||| ||||||||||||   ||  | ||||||||||||||  | | ||||||| ||| ||||||||||||||||||| |         ||||||||    
T  34759030 ctttaaatagtaacttatcatggaaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattacttctttttgaatcctta 34758931  T
Q  273 aagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||||| ||| ||||||||||||||||||||||    
T  34758930 aagagtgccccggaggcactcgttaacaagaccctt 34758895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 7754772 - 7754844
Alignment:
Q  170 ggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgactttttt 242  Q
    ||||||||||| |||||||||||| | ||  ||| |||||||||||| ||||||||||||| |||||||||||    
T  7754772 ggcctttaaatagtaacttatcatgaaaatatgtctaatcaatgcatcggaaatcgaaatcgttgactttttt 7754844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 4033132 - 4033050
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||||||  || ||||||| | ||  |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  4033132 cctttaaatgtaaatttatcatgaaaatgtgtgtaatca-tgcatcggaaatcgaaatctttgatttttttataaaataatttc 4033050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 40546398 - 40546348
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 253  Q
    |||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  40546398 tgtaatcaatgcattggaaatcgaaatatttgacttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 303
Target Start/End: Original strand, 54911999 - 54912133
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    |||||| ||||||  |||||||||| | ||  ||||||||||||||||  ||||| ||||| ||| ||||| |||||||||| |||        | |||     
T  54911999 aggcctataaatgacaacttatcatgaaaatatgtgtaatcaatgcatccgaaattgaaatatttaactttgttataaaatagtttattcttttggaatt 54912098  T
Q  269 cttaaagagtgcctcgggggcactcgttaacaaga 303  Q
    |||||||||||| |||||| |||||||||||||||    
T  54912099 cttaaagagtgcttcggggacactcgttaacaaga 54912133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 308
Target Start/End: Complemental strand, 28434581 - 28434477
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaag 302  Q
    |||||||||||||| | ||||| |||| ||||||||||| || |||||||||         |||||||||||||||| | |||| |||||||||||||||    
T  28434581 tgtaatcaatgcatcgaaaatcaaaatatttgacttttt-atgaaataatttattctcttaaaatccttaaagagtgtcccgggagcactcgttaacaag 28434483  T
Q  303 accctt 308  Q
    ||||||    
T  28434482 accctt 28434477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 55110098 - 55110047
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    |||||||||||||| | |||||||||| ||||| ||||||||||||||||||    
T  55110098 tgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataattt 55110047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 37708442 - 37708405
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    |||||||||||||||||||||||| |||||||||||||    
T  37708442 cttaaagagtgcctcgggggcacttgttaacaagaccc 37708405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 52309021 - 52308981
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  52309021 cttaaagagtgccccgggggcactcgttaacaagactcttt 52308981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 4305240 - 4305278
Alignment:
Q  266 atccttaaagagtgcctcgggggcactcgttaacaagac 304  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  4305240 atccttaaagagtgccccaggggcactcgttaacaagac 4305278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 30687084 - 30687166
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||||| ||| ||||||| | ||  ||||||||||||||||   ||||| || ||||||| |||||||||| ||||||||    
T  30687084 ctttaaatgataatttatcatgaaaatatgtgtaatcaatgcatcaaaaatcaaactctttgatttttttataacataatttc 30687166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 38388785 - 38388731
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||||||||||  | ||||| |||| ||||||||||||||||| |||||||    
T  38388785 tgtgtaatcaatgcaatgaaaatcaaaatatttgacttttttataaattaatttc 38388731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 46711949 - 46711999
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 253  Q
    |||||||||||||| ||||||| |||| ||||||||||||| | |||||||    
T  46711949 tgtaatcaatgcattggaaatcaaaatgtttgacttttttaaagaataatt 46711999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 4305150 - 4305117
Alignment:
Q  267 tccttaaagagtgcctcgggggcactcgttaaca 300  Q
    ||||||||||||||| ||||||||||||||||||    
T  4305150 tccttaaagagtgccccgggggcactcgttaaca 4305117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 17517557 - 17517520
Alignment:
Q  270 ttaaagagtgcctcgggggcactcgttaacaagaccct 307  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  17517557 ttaaagagtgccccgggagcactcgttaacaagaccct 17517520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 19898135 - 19898188
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    |||||||||||||||| | |||| ||||| ||||| |||| |||||||||||||    
T  19898135 tgtgtaatcaatgcattgaaaattgaaatatttgatttttatataaaataattt 19898188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 29612024 - 29611987
Alignment:
Q  270 ttaaagagtgcctcgggggcactcgttaacaagaccct 307  Q
    |||||||||| | |||||||||||||||||||||||||    
T  29612024 ttaaagagtgtcccgggggcactcgttaacaagaccct 29611987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 169 - 308
Target Start/End: Complemental strand, 31206415 - 31206276
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    |||||||||||| |||| ||||||||| ||  |||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||         ||||    
T  31206415 aggcctttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcggaaatcaaaatatttgatttttttataaaataatttctactttttgaatc 31206316  T
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    |||||||||| ||||| ||| |||||||||||||||||||    
T  31206315 cttaaagagtacctcgtggggactcgttaacaagaccctt 31206276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 38956985 - 38956905
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 253  Q
    ||||||||| ||||||||||| | ||  |||||||||||||||| |||||||||||| ||||||||||||||||| |||||    
T  38956985 ctttaaatgataacttatcatgaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgacttttttataaattaatt 38956905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 5020055 - 5020139
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||||||||||||||| |||| | ||  ||||||||||||| || |||||| ||||||||||||||||||||||||| |||||    
T  5020055 aggcctttaaatggtaacttgtcatgaaaa--tgtgtaatcaatgtatcggaaattgaaatctttgacttttttataaaattatttc 5020139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 5217763 - 5217844
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    ||||| ||||||| ||||||||| ||  |||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||    
T  5217763 ctttatatggtaatttatcataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgacttttttataaaatcattt 5217844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 45368729 - 45368836
Alignment:
Q  174 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaa 273  Q
    |||||||||||||||||||| | ||  ||| |||||| ||||| | |||| ||||| ||| |||||||||||||||||||||       | |||||||||    
T  45368729 tttaaatggtaacttatcatgaaaatatgtataatcattgcatcgaaaattgaaatatttaacttttttataaaataatttctttttttggaatccttaa 45368828  T
Q  274 agagtgcc 281  Q
    ||||||||    
T  45368829 agagtgcc 45368836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 28207629 - 28207589
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  28207629 cttaaagagtgtctcgggggcactcgttaacaagacccttt 28207589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 7262119 - 7262161
Alignment:
Q  265 aatccttaaagagtgcctcgggggcactcgttaacaagaccct 307  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  7262119 aatccttaaagagtgccctgggggcactcgttaacaagaccct 7262161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 1876583 - 1876622
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  1876583 cttaaagagtgccccgggggcactcgttaacaagaacctt 1876622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 18808868 - 18808907
Alignment:
Q  270 ttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  18808868 ttaaagagtgccccgggagcactcgttaacaagacccttt 18808907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 20279656 - 20279695
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  20279656 cttaaagagtgccccgggggcacttgttaacaagaccctt 20279695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 21066283 - 21066322
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  21066283 cttaaagagtgccccgggggcacttgttaacaagaccctt 21066322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 24869418 - 24869380
Alignment:
Q  270 ttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  24869418 ttaaagagtgccacaggggcactcgttaacaagaccctt 24869380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 31265002 - 31264964
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccct 307  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  31265002 cttaaagagtgccacaggggcactcgttaacaagaccct 31264964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 7574278 - 7574319
Alignment:
Q  267 tccttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    |||||||| |||||| |||| |||||||||||||||||||||    
T  7574278 tccttaaatagtgccccgggagcactcgttaacaagaccctt 7574319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 6e-27; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 174 - 305
Target Start/End: Original strand, 20683003 - 20683134
Alignment:
Q  174 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaa 273  Q
    |||| ||||||||||||||||| ||  |||||||||||||||| |||||||||||| ||||| |||||||||||||  ||||       | |||||||||    
T  20683003 tttatatggtaacttatcataaaaatatgtgtaatcaatgcatcggaaatcgaaatatttgatttttttataaaatcttttcttcttttggaatccttaa 20683102  T
Q  274 agagtgcctcgggggcactcgttaacaagacc 305  Q
    |||||| | |||||||||||||||||||||||    
T  20683103 agagtgtcccgggggcactcgttaacaagacc 20683134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 169 - 307
Target Start/End: Original strand, 18053019 - 18053156
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagt-tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaat 267  Q
    ||||||||||| ||||| ||||||| | |||| ||| |||||||||||| ||||||| |||| |||||||||||||||||||||||||       |||||    
T  18053019 aggcctttaaa-ggtaatttatcatga-aagtatgtataatcaatgcatcggaaatcaaaatatttgacttttttataaaataatttcttcttttgaaat 18053116  T
Q  268 ccttaaagagtgcctcgggggcactcgttaacaagaccct 307  Q
    |||||||||||| | | ||  |||||||||||||||||||    
T  18053117 ccttaaagagtgtcccaggaacactcgttaacaagaccct 18053156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 175 - 302
Target Start/End: Original strand, 34546275 - 34546402
Alignment:
Q  175 ttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaa 274  Q
    ||||||| ||||||||||| | ||  ||||||||||||||||  ||||||||| | ||||||||||||||||| |||||||       | |||||| |||    
T  34546275 ttaaatgataacttatcatgaaaatgtgtgtaatcaatgcatcagaaatcgaagtatttgacttttttataaattaatttcttcatttggaatcctcaaa 34546374  T
Q  275 gagtgcctcgggggcactcgttaacaag 302  Q
    ||||||  | ||||||||||||||||||    
T  34546375 gagtgctccaggggcactcgttaacaag 34546402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 169 - 304
Target Start/End: Original strand, 44941082 - 44941216
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    ||||||||||||||||| ||||||  | ||  | |||||||||||||| |||||||||||||||| |||||||||||| ||| ||||         ||||    
T  44941082 aggcctttaaatggtaatttatcaggaaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttcttttagaatc 44941181  T
Q  269 cttaaagagtgcctcgggggcactcgttaacaagac 304  Q
    ||||||||||| |||  |||||||||||||||||||    
T  44941182 cttaaagagtgtctc-agggcactcgttaacaagac 44941216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 42945015 - 42945098
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataat 252  Q
    |||||||||||| |||| ||||||||| ||  |||||||||||||||  |||||||||||| ||||| ||||| ||||||||||    
T  42945015 aggcctttaaatagtaaattatcataaaaatatgtgtaatcaatgcactggaaatcgaaatatttgagtttttaataaaataat 42945098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 307
Target Start/End: Original strand, 8773678 - 8773812
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 272  Q
    ||||||| ||||||||| ||| | ||  | ||||||||||||||  |||||| |||| |||||||||||||||||||||||||         |||| |||    
T  8773678 ctttaaagggtaacttaacatgaaaatatatgtaatcaatgcatcagaaatcaaaatatttgacttttttataaaataatttcttcttttagaatcttta 8773777  T
Q  273 aagagtgcctcgggggcactcgttaacaagaccct 307  Q
    ||||||||| || | | ||||||||||||||||||    
T  8773778 aagagtgccccgagagtactcgttaacaagaccct 8773812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 2825989 - 2826043
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||    
T  2825989 tgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttc 2826043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 4238358 - 4238412
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||||||||||||||| | |||||||||| ||||| |||||||||||||||||||    
T  4238358 tgtgtaatcaatgcatcgaaaatcgaaatatttgatttttttataaaataatttc 4238412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 8789957 - 8789875
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||| ||||||||| ||| | ||  ||||||||||||||||  |||||| |||| ||| |||||||||||||||||||||    
T  8789957 ctttaaagggtaacttaacatgaaaatatgtgtaatcaatgcatcagaaatcaaaatatttaacttttttataaaataatttc 8789875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 6761761 - 6761862
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaag 302  Q
    |||||||||||||| |||||| ||||| ||||||||||||||| ||| ||||        | ||| |||||||||||||||||  ||||| |||||||||    
T  6761761 tgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcctcggaagcacttgttaacaag 6761860  T
Q  303 ac 304  Q
    ||    
T  6761861 ac 6761862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 3882689 - 3882583
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaaca 300  Q
    |||||||||||||||| | ||| |||||| |||||| |||||| | ||||||| |         ||| ||||||||||||| || |||||||||||||||    
T  3882689 tgtgtaatcaatgcattgaaaaccgaaatatttgacctttttaaagaataattgcttattttagaatgcttaaagagtgccccgagggcactcgttaaca 3882590  T
Q  301 agaccct 307  Q
    |||||||    
T  3882589 agaccct 3882583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 5962066 - 5962105
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  5962066 cttaaagagtgtctcggaggcactcgttaacaagaccctt 5962105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 308
Target Start/End: Original strand, 15816805 - 15816844
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  15816805 cttaaagagtgccctgggggcactcgttaacaagaccctt 15816844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 25622538 - 25622499
Alignment:
Q  270 ttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  25622538 ttaaagagtgcatcgggagcactcgttaacaagacccttt 25622499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 13538401 - 13538363
Alignment:
Q  269 cttaaagagtgcc-tcgggggcactcgttaacaagaccc 306  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  13538401 cttaaagagtgccctcgggggcactcgttaacaagaccc 13538363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 19495275 - 19495237
Alignment:
Q  202 gtgtaatcaatgcataggaaatcgaaatctttgactttt 240  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  19495275 gtgtaatcaatgcattggaaatcgaaatatttgactttt 19495237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 6334709 - 6334758
Alignment:
Q  205 taatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    |||||||||||| |||||| |||| ||||||| |||||| ||||||||||    
T  6334709 taatcaatgcattggaaattgaaaactttgacatttttaaaaaataattt 6334758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 8964466 - 8964413
Alignment:
Q  200 ttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 253  Q
    ||||||||||||||||| |||||| ||||| ||| ||||||||| | |||||||    
T  8964466 ttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataatt 8964413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 32859789 - 32859752
Alignment:
Q  270 ttaaagagtgcctcgggggcactcgttaacaagaccct 307  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  32859789 ttaaagagtgccctgggggcactcgttaacaagaccct 32859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 173 - 309
Target Start/End: Complemental strand, 47507711 - 47507575
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctta 272  Q
    |||||||||||||||| |||| | ||  |||||||||||| ||| |||||| ||||||||||| ||||||||||||| |||||         ||||||||    
T  47507711 ctttaaatggtaacttctcatgaaaaaatgtgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatcctta 47507612  T
Q  273 aagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    ||||||||| ||| | |||||||||||||||||||||    
T  47507611 aagagtgccccggagacactcgttaacaagacccttt 47507575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 48137883 - 48137802
Alignment:
Q  174 tttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||| |||| ||||||||| ||  |||||||||||||||| | ||||| |||| |||||||||||||||||||||||||    
T  48137883 tttaaatagtaatttatcataaaaatatgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttataaaataatttc 48137802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 300
Target Start/End: Complemental strand, 38452276 - 38452146
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    ||||||||||| | ||| |||| || | ||  ||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||        |||||    
T  38452276 aggcctttaaaagataatttattatgaaaatatgtgtaaccaatgcatcggaaattgaaatatttgacttttttataaaataatttcttctttttaaatc 38452177  T
Q  269 cttaaagagtgcctcgggggcactcgttaaca 300  Q
    |||||||| ||  |||||||||||||||||||    
T  38452176 cttaaagaatg-ttcgggggcactcgttaaca 38452146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 308
Target Start/End: Complemental strand, 8170100 - 8169997
Alignment:
Q  205 taatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaagac 304  Q
    ||||||||| || ||||||| |||| |||||||||||||||||||||||||       | |||||||||||||||   |||| | ||| |||||||||||    
T  8170100 taatcaatgtatcggaaatcaaaatatttgacttttttataaaataatttcttcttttggaatccttaaagagtgttccgggagtacttgttaacaagac 8170001  T
Q  305 cctt 308  Q
    ||||    
T  8170000 cctt 8169997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 43670512 - 43670430
Alignment:
Q  173 ctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||||||||| ||||||||| ||  | |||||||| ||||| | ||||| |||||||||| ||||||||||||| |||||    
T  43670512 ctttaaatggtaatttatcataaaaacatatgtaatcagtgcatcgaaaatcaaaatctttgatttttttataaaattatttc 43670430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 302
Target Start/End: Original strand, 30412921 - 30413053
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatc 268  Q
    |||||||||||| |||| ||||||  | ||  ||| |||||||||||| || ||||||||| ||||||||| | |||||||| ||||       ||||||    
T  30412921 aggcctttaaatagtaatttatcacgaaaatatgtataatcaatgcatcgggaatcgaaatatttgactttatcataaaatagtttcttcttttgaaatc 30413020  T
Q  269 cttaaagagtgcctcgggggcactcgttaacaag 302  Q
    |||||||||| | || ||| ||||||||||||||    
T  30413021 cttaaagagtacatc-gggacactcgttaacaag 30413053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 2964146 - 2964068
Alignment:
Q  177 aaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    |||| |||||||||||||| ||  ||||||||||||| || | ||||| |||| ||| | |||||||||||||||||||    
T  2964146 aaatagtaacttatcataaaaatatgtgtaatcaatgtatcgaaaatcaaaatttttaatttttttataaaataatttc 2964068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 5248168 - 5248114
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||||||||||||    ||||||||| |||||||||||||||||||||||||    
T  5248168 tgtgtaatcaatgcatcaataatcgaaatatttgacttttttataaaataatttc 5248114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 2741246 - 2741193
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataattt 254  Q
    |||||||||||||||| ||||||| |||| ||||| ||||| ||||||||||||    
T  2741246 tgtgtaatcaatgcatcggaaatcaaaatatttgattttttaataaaataattt 2741193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 27123279 - 27123242
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  27123279 cttaaagagtgccccgggggcactcgttaacaagaccc 27123242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 1360609 - 1360557
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatt 253  Q
    |||||||||||||||| |||||||||||  ||| ||||||||| |||||||||    
T  1360609 tgtgtaatcaatgcattggaaatcgaaacatttaacttttttaaaaaataatt 1360557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 27766787 - 27766827
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  27766787 cttaaagagtgccctgggggcactcgttaacaagacccttt 27766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 34299844 - 34299884
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagacccttt 309  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  34299844 cttaaaaagtgccccgggggcactcgttaacaagacccttt 34299884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 42493782 - 42493701
Alignment:
Q  201 tgtgtaatcaatgcataggaaatcgaaatctttgacttttttat-aaaataatttcnnnnnnngaaatccttaaagagtgcc 281  Q
    |||||||||||||||| | ||||| |||| |||||||||||||| |||||||||||       | |||||||||||||||||    
T  42493782 tgtgtaatcaatgcatcgaaaatcaaaatatttgacttttttatcaaaataatttcttcttttggaatccttaaagagtgcc 42493701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 16878809 - 16878726
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttc 255  Q
    ||||||||| |||||||  ||||| ||  | |||||||||||||| |  ||||||||| ||| |||||||||| ||||||||||    
T  16878809 cctttaaatagtaactttgcataaaaatatttgtaatcaatgcattgagaatcgaaatatttaacttttttatgaaataatttc 16878726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 300
Target Start/End: Complemental strand, 17157770 - 17157739
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaaca 300  Q
    ||||||||||||||||||||||||||||||||    
T  17157770 cttaaagagtgcctcgggggcactcgttaaca 17157739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 42890298 - 42890345
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaata 250  Q
    ||||||||||| || |||||||||||| ||||||||||||| ||||||    
T  42890298 tgtaatcaatgtattggaaatcgaaatgtttgacttttttaaaaaata 42890345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 305
Target Start/End: Original strand, 7596181 - 7596283
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgact-tttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaa 301  Q
    |||||||||||||| |||||| ||||| ||||||| ||||||| ||||||||||        |||| ||||||||||||| ||| | ||||| |||||||    
T  7596181 tgtaatcaatgcattggaaattgaaatttttgactctttttatgaaataatttcttcttttaaaatgcttaaagagtgcc-cggagacactcattaacaa 7596279  T
Q  302 gacc 305  Q
    ||||    
T  7596280 gacc 7596283  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 28770482 - 28770445
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  28770482 cttaaagagtgccccggaggcactcgttaacaagaccc 28770445  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 45375444 - 45375485
Alignment:
Q  265 aatccttaaagagtgcctcgggggcactcgttaacaagaccc 306  Q
    ||||||||||||||||| ||| |||||||||||| |||||||    
T  45375444 aatccttaaagagtgccccggaggcactcgttaataagaccc 45375485  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 46684557 - 46684626
Alignment:
Q  169 aggcctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgactt 238  Q
    ||||||||||||||||| ||||||| | ||  | |||||||||||| | | |||||||||| ||||||||    
T  46684557 aggcctttaaatggtaatttatcatgaaaatatatgtaatcaatgcgtcgaaaatcgaaatatttgactt 46684626  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 172 - 299
Target Start/End: Original strand, 12383022 - 12383149
Alignment:
Q  172 cctttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatcctt 271  Q
    ||||||||| |||| ||||||||| ||  ||| |||||||||||| ||||||| |||| ||| |||||||||||||||||||||       ||||| |||    
T  12383022 cctttaaatagtaatttatcataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttctccttttgaaattctt 12383121  T
Q  272 aaagagtgcctcgggggcactcgttaac 299  Q
    |||||||||| |  | ||||||||||||    
T  12383122 aaagagtgccccaagagcactcgttaac 12383149  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 7465548 - 7465451
Alignment:
Q  203 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaagagtgcctcgggggcactcgttaacaa 301  Q
    |||||||||||||| |||||| ||||| ||||||||||||||  || ||||||         |||||||||| |||||| |||||||||||||||||||    
T  7465548 tgtaatcaatgcatcggaaattgaaatatttgacttttttatggaacaatttcttctttaagaatccttaaaaagtgcc-cgggggcactcgttaacaa 7465451  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 31702747 - 31702874
Alignment:
Q  175 ttaaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcnnnnnnngaaatccttaaa 274  Q
    |||||| ||||||| | |||| ||  ||||||||||||||||  |||||  ||||  || |||||||||||||||||||||       ||||| ||||||    
T  31702747 ttaaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaaattcttaaa 31702846  T
Q  275 gagtgcctcgggggcactcgttaacaagac 304  Q
    ||||||| |  || ||||||||||||||||    
T  31702847 gagtgcccc--ggacactcgttaacaagac 31702874  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 35229299 - 35229258
Alignment:
Q  267 tccttaaagagtgcctcgggggcactcgttaacaagaccctt 308  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  35229299 tccttaaagagtgtcccgggggcactcgttaacaagaccctt 35229258  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 35241509 - 35241430
Alignment:
Q  177 aaatggtaacttatcataataagttgtgtaatcaatgcataggaaatcgaaatctttgactt-ttttataaaataatttc 255  Q
    ||||||||||||||||||| ||  ||| ||||||||||||  |||||| |||| ||| | || |||||||||||||||||    
T  35241509 aaatggtaacttatcataaaaatatgtataatcaatgcatcagaaatcaaaatatttaatttcttttataaaataatttc 35241430  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 31854799 - 31854761
Alignment:
Q  269 cttaaagagtgcctcgggggcactcgttaacaagaccct 307  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  31854799 cttaaagagtgtctcgggggcactcgttaataagaccct 31854761  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 34232057 - 34232090
Alignment:
Q  270 ttaaagagtgcctcgggggcactcgttaacaaga 303  Q
    |||||||||||||| |||||||||||||||||||    
T  34232057 ttaaagagtgcctccggggcactcgttaacaaga 34232090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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