View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_high_13 (Length: 334)
Name: NF5359_high_13
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 132 - 316
Target Start/End: Complemental strand, 5773775 - 5773591
Alignment:
| Q |
132 |
taggagtctaccaaattaatttagaatatcattttttgtttgttttacatacttagttagtgaagaaaaatcaaagtccgatatgtagatatatttcttt |
231 |
Q |
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| T |
5773775 |
taggagtctaccaaattaatttagaatatcattttttgtttgttttacatacttagttagtgaagaaagatcaaagtccgatatgtagatatgtttcttt |
5773676 |
T |
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| Q |
232 |
ttcttttctcttaaaatacaatgaattttagtaagaattaaatgaagggaaagaaggacataaggactaaagatagagtagatac |
316 |
Q |
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| T |
5773675 |
ttcttttctcttaaaatacaatgaaatttagtaagaattaaatgaagggaaagaaggacataaggactaaagatagagtagatac |
5773591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 5774041 - 5773921
Alignment:
| Q |
13 |
caaaggcacaacttttagattctcttggaactaacataaatagtacaaattcaatcacccttcacaatttatttttatatcaaaactaagtttatttttc |
112 |
Q |
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| T |
5774041 |
caaaggcacaacttttagattctcttggaactaacataaatagtacaaattcaatcacccttcacaatttatttttatatcaaaactaagtttatttttc |
5773942 |
T |
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| Q |
113 |
aaagtcgatgaccacaactta |
133 |
Q |
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| T |
5773941 |
acagtcgatgaccacaactta |
5773921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 5797951 - 5798031
Alignment:
| Q |
235 |
ttttctcttaaaatacaatgaattttagtaaga---attaaatgaagggaaagaaggacataaggactaaagatagagtag |
312 |
Q |
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| T |
5797951 |
ttttttcttaaaatacaatgaattttagtaagaagaattaaatgaagggaaagaaggacataaggactaaagatagagtag |
5798031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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