View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_high_14 (Length: 305)
Name: NF5359_high_14
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 29448465 - 29448709
Alignment:
| Q |
19 |
atgtctatgggccatcccaaattaaacatacattatgtgatgctgaggaagtggttgcattatactgtgtgtgctattagtttggtcaattttgatttag |
118 |
Q |
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| T |
29448465 |
atgtctatgggccatcccaaattaaacatacattatgtgatgctgaggaaatggttgcattatactgtgtgtgctattagtttggtcaattttgattttg |
29448564 |
T |
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| Q |
119 |
tttttgtgtagtgtagaagcctcctaatttggcaatttcctttctttaatcttggaatataccctttgacaaaacaagaaaaaacgagtcatctagaatg |
218 |
Q |
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| T |
29448565 |
tttttgtgtagtgtagaagcctcctaatttggcaatttcctttctttaatcttggaatataccctttgacaaaacaagaaaaaacgagtcatctaatatg |
29448664 |
T |
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| Q |
219 |
aagccaaatgaagttttaggattgtcatcagaaataggaatattt |
263 |
Q |
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| T |
29448665 |
aagccaaatgaagttttaggattgtcatcagaaatatgaatattt |
29448709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 30260131 - 30259887
Alignment:
| Q |
19 |
atgtctatgggccatcccaaattaaacatacattatgtgatgctgaggaagtggttgcattatactgtgtgtgctattagtttggtcaattttgatttag |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30260131 |
atgtctatgggccattccaaattaaacatacattatgtgatgctgaggaaatggttgcattatactgcgtgtgctattagtttggtcaattttgatttag |
30260032 |
T |
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| Q |
119 |
tttttgtgtagtgtagaagcctcctaatttggcaatttcctttctttaatcttggaatataccctttgacaaaacaagaaaaaacgagtcatctagaatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30260031 |
tttttgtgtagtgtagaagcctcctaatttggcaatttcctttctttaatcttggaatataccctttgacaaaacaagaaaaaacgagtcatctaatatg |
30259932 |
T |
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| Q |
219 |
aagccaaatgaagttttaggattgtcatcagaaataggaatattt |
263 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30259931 |
aagccaaatgaagttttaggattgtcatcagaaatatgaatattt |
30259887 |
T |
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