View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5359_high_18 (Length: 237)
Name: NF5359_high_18
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 37225351 - 37225468
Alignment:
| Q |
105 |
ataagtctataaccacaaacaatttagaacttaaaacttatgagcaaagcaacctaagaatctacaacatgtggtgatttagactgagcatatggtggat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37225351 |
ataagtctataaccacaaacaatttagaacttaaaacttatgagcaaagcaacctaagaatctacaacatgtggtgatttagactgagcatatggtggat |
37225450 |
T |
|
| Q |
205 |
ttagagttgcaaggaaaa |
222 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37225451 |
ttagagttgcaaggaaaa |
37225468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 37224711 - 37224817
Alignment:
| Q |
1 |
attttatcgttgaaatgaacacaactaatcatattcttaaagaaccgtgcacaactcaaatcagatacttataatgagacggatggagtagtacttaagt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37224711 |
attttatcgttgaaataaacacaactaatcatattcttaaagaaccgtgcacaactcaaatcagatacttataatgagacggatggagtagtacttaagt |
37224810 |
T |
|
| Q |
101 |
taacata |
107 |
Q |
| |
|
||||||| |
|
|
| T |
37224811 |
taacata |
37224817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 3098702 - 3098789
Alignment:
| Q |
2 |
ttttatcgttgaaatgaacacaactaatcatattcttaaagaaccgtgcacaactcaaatcagatacttataatgagacggatggagta |
90 |
Q |
| |
|
||||||| ||||||| |||| |||| ||||| ||||||| |||| |||||||||||||| ||| ||||||||| | || ||||||||| |
|
|
| T |
3098702 |
ttttatcattgaaatcaacaaaacttatcattttcttaa-gaactatgcacaactcaaataagacacttataataacacagatggagta |
3098789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34563136 - 34563215
Alignment:
| Q |
1 |
attttatcgttgaaatgaacacaactaatcatattcttaaagaaccgtgcacaactcaaatcagatacttataatgagacg |
81 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||| ||||| |||||| ||||| |||||| || | | ||||||| ||||||| |
|
|
| T |
34563136 |
attttatcgttgaaatcaacaaaactgatcattttctt-aagaactgtgcataactcagatgaaacacttatagtgagacg |
34563215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University