View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_high_2 (Length: 682)
Name: NF5359_high_2
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 478
Target Start/End: Complemental strand, 44547426 - 44546958
Alignment:
| Q |
6 |
agcagcacagacggccaacaaaaacaaaatcgagcagaaaagtaccaatttggatcgcatgcactcgacgtttgataaaagttggacattctagatttca |
105 |
Q |
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| T |
44547426 |
agcaacacagacggccaacaaaaacaaaatcgaccagaaaagtaccaatttggatcgcatgcactcgacgtttgataaaagttggacattctagatttca |
44547327 |
T |
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| Q |
106 |
atctcaatattttagggtttagattaaaacagtgaaaaataaacttatagcatcttgattcaacgcctgccaatgttccaactgcgtgcatatgacttga |
205 |
Q |
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| T |
44547326 |
atctcaatattttagggtttagattaaaacagtgaaaaataaacttatagcatcttgattcaacgcctgccaatgttccaactgcgtgcatatgacttga |
44547227 |
T |
|
| Q |
206 |
gtgcatacaaatccaaccaaataagtacaaaagcaaattgcctcgacag-cccccgacattcacacaatcggtgcatcgctaactgttagatgggatcaa |
304 |
Q |
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| T |
44547226 |
gtgcatacaaatccaaccaaataagtacaaaagcaaattgccttgacagccccccgaca-tcacacaatcagtgcatcgctaactgttagatgggatcaa |
44547128 |
T |
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| Q |
305 |
gatctgaaccatttggtctcgatccaacggttaccgatgggctgactggaagcaatggcattcgaatagatagtacatacacatcataaaagaaggataa |
404 |
Q |
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| T |
44547127 |
gatctgaaccatttggtctcgatccaacggttaccgatgggctgactggaagcaatgacattcga----atagtacatacacatcataaaagaaagataa |
44547032 |
T |
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| Q |
405 |
aatgtggactattagnnnnnnnnnnnnttgacaaatataagattgcatattaccaagctttccacattaattat |
478 |
Q |
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| T |
44547031 |
aatgtggactattagaaaaaagaaaaattgacaaatttaagattgcatattaccaagctttccacattaattat |
44546958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 543 - 663
Target Start/End: Complemental strand, 44546893 - 44546773
Alignment:
| Q |
543 |
acaaatgtagctttcacagctgaaacaccttcttcctcattcacatcgttcttttctggaatctttatcggacgtcctcttttccttttaccagcatttt |
642 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44546893 |
acaaatgtagctttcacagctgaaacaccttcttcctcattcacatcgttcttttctggaatctttatcggacgtcctcttttccttttaccagcatttt |
44546794 |
T |
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| Q |
643 |
tatttccttttgaagccacat |
663 |
Q |
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| T |
44546793 |
tatttccttttgaagccacat |
44546773 |
T |
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Back To:
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