View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_high_4 (Length: 519)
Name: NF5359_high_4
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 5638633 - 5639137
Alignment:
| Q |
1 |
tgtgatactgttcataaccttcttggatttccatgtatactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638633 |
tgtgatactgttcataaccttcttggatttccatgtatactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaa |
5638732 |
T |
|
| Q |
101 |
actcaaatttaagtnnnnnnnntagtcatggtttgtggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtg |
200 |
Q |
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| T |
5638733 |
actcaaatttaagtaaaaaaaatagtcatggtttgtggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtg |
5638832 |
T |
|
| Q |
201 |
ttaaacaccactcaattaatgctctcatgaaacaagtttcaaaggaaatttagtga-gagaatgatagttcggagaatgcaattttcttattgcaccaag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638833 |
ttaaacaccactcaattaatgctctcatgaaacaagtttcaaaggaaatttagtgaagagaatgatagttcggagaatgcaattttcttattgcaccaag |
5638932 |
T |
|
| Q |
300 |
aaaaataagcaagcttaactaatattcttacttagtacgtatttagttaattttacttaaatttgagttcagagggagtgtttttcacggaacttctttc |
399 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5638933 |
aaaaataagcaaggttaactaatattcttaattagtacgtatttagttaattttacttaaatttgagttcggagggagtgtttttcacggaacttctttc |
5639032 |
T |
|
| Q |
400 |
attttttcccccacgtttccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttga |
499 |
Q |
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| T |
5639033 |
attttttcccccacgtttccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttga |
5639132 |
T |
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| Q |
500 |
tgatg |
504 |
Q |
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||||| |
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| T |
5639133 |
tgatg |
5639137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 484
Target Start/End: Original strand, 22965261 - 22965327
Alignment:
| Q |
418 |
ccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
484 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
22965261 |
ccttcattaatacctgaatttgcaggtccgaactataaaatttgcatgattaagtgatgtgcataac |
22965327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 38954654 - 38954590
Alignment:
| Q |
420 |
ttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
484 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
38954654 |
ttcattaatacctgaatttgcaggtccaaactataaaatttgcatgattaagcgatgtgcataac |
38954590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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