View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_high_9 (Length: 387)
Name: NF5359_high_9
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_high_9 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 4 - 370
Target Start/End: Original strand, 33382969 - 33383336
Alignment:
| Q |
4 |
ggaggagcagagaagatggagaagattggctaccagaaggatttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgtt |
103 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33382969 |
ggagaagcaaagaagatggagaagattggctaccagaaggatttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgtt |
33383068 |
T |
|
| Q |
104 |
gattcttgaacacgaagcaattggagcatttgtgactcattgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcct |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33383069 |
gattcttgaacacgaagcaattggagcatttgtgactcattgtggatggaattcagttttagaaggtgtggttgctggggtacctatcgttacttggcct |
33383168 |
T |
|
| Q |
204 |
gttgctgctgaacaattttacaatgagaagttggtgaatgaggtacttaaaattggtgtacctgttggagttaaaaaatgggttggattggagggagat- |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383169 |
gttgctgctgaacaattttacaatgagaagttggtgaatgaggtacttaaaattggtgtacctgttggagttaaaaaatgggttggattggagggagata |
33383268 |
T |
|
| Q |
303 |
agtgttcaatgggatgcactggaaaaagctgtgaagaggattatggaagatgaagaagtagaggaaat |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383269 |
agtgttcaatgggatgcactggaaaaagctgtgaagaggattatggaagatgaagaagtagaggaaat |
33383336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 44 - 370
Target Start/End: Complemental strand, 33391045 - 33390719
Alignment:
| Q |
44 |
atttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaattggagcatttgtgactcat |
143 |
Q |
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| T |
33391045 |
atttgagaaaagaatgaaaggaaagggactaattataagaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcat |
33390946 |
T |
|
| Q |
144 |
tgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgttgctgctgaacaattttacaatgagaagttggtgaatg |
243 |
Q |
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||||||||||| | | ||| ||| |||||| |||||| |||||||| ||||||||||| | ||| |||| |||||||| |||||||||||||| | || |
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| T |
33390945 |
tgtggatggaacttaactttggaaagtgtagctgctggagtacctatgattacttggcctatagctcctgagcaattttataatgagaagttggtaactg |
33390846 |
T |
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| Q |
244 |
aggtacttaaaattggtgtacctgttggagttaaaaaatgggttggattggagggagatagtgttcaatgggatgcactggaaaaagctgtgaagaggat |
343 |
Q |
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| T |
33390845 |
atgtacttaaaattggtgtacctgttggagctaaaacatgggatggaaaggtgagtgataaagttcattgggatgcagtggagaaggctgtgaagaaggt |
33390746 |
T |
|
| Q |
344 |
tatggaagatgaagaagtagaggaaat |
370 |
Q |
| |
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|||||||| ||||||| | ||||||| |
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| T |
33390745 |
tatggaaggagaagaagcaaaggaaat |
33390719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 33401823 - 33401723
Alignment:
| Q |
136 |
tgactcattgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgttgctgctgaacaattttacaatgagaagtt |
235 |
Q |
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||||||||||||||||||| ||| |||||||||||| |||||| |||||||| | |||||||| || | ||||| |||||| |||||||||||| |
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| T |
33401823 |
tgactcattgtggatggaactcaactttagaaggtgtgtgtgctggagtacctatggcgacttggccactttcagctgagcaatttatcaatgagaagtt |
33401724 |
T |
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| Q |
236 |
g |
236 |
Q |
| |
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| T |
33401723 |
g |
33401723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 27688842 - 27688496
Alignment:
| Q |
14 |
agaagatggagaagattggctaccagaaggatttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaa |
113 |
Q |
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|||||||||||| || |||||||| |||||||| ||| |||||| ||||||||| ||||||||||||||||||||||| || ||| | ||||||||||| |
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| T |
27688842 |
agaagatggagatgaatggctacctgaaggattcgaggaaagaacggaaggaaaaggactaattataagaggttggtctccacaagtgatgattcttgaa |
27688743 |
T |
|
| Q |
114 |
cacgaagcaattggagcatttgtgactcattgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgttgctgctg |
213 |
Q |
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| T |
27688742 |
catgaagcaatcggggcatttgtgacgcattgcggatggaattcggttttagaaggagtggtagctggagtacctatgattacttggcctgtggcggccg |
27688643 |
T |
|
| Q |
214 |
aacaattttacaatgagaagttggtgaatgaggtacttaaaattggtgtacctgttggagttaaaaaatgggttggattggagggagatagtgttcaatg |
313 |
Q |
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| ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |||||| || || |||| |||| |||| |
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| T |
27688642 |
agcaattttacaatgagaagttggtcactgaggtacttaaaactggtgtacctgttggagttaaaaagtgggttatgaaggttggggataatgttgaatg |
27688543 |
T |
|
| Q |
314 |
ggatgcactggaaaaagctgtgaagaggattatggaagatgaagaag |
360 |
Q |
| |
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||||||| |||| || |||||||||||| ||||||||| ||||||| |
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| T |
27688542 |
ggatgcagtggagaaggctgtgaagagggttatggaaggggaagaag |
27688496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 44 - 281
Target Start/End: Original strand, 18989456 - 18989693
Alignment:
| Q |
44 |
atttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaattggagcatttgtgactcat |
143 |
Q |
| |
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||||||||||| |||| ||||||| ||||||||||||||||||||| | | ||| |||||| || |||| |||| ||||||||||||||||||||| |
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| T |
18989456 |
atttgagaaaataatgaaaggaaaaggactaattataagaggttggcctcttcaacttttgatttttcaacataaagctattggagcatttgtgactcat |
18989555 |
T |
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| Q |
144 |
tgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgttgctgctgaacaattttacaatgagaagttggtgaatg |
243 |
Q |
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| T |
18989556 |
tgtggatggaacttaactttggaaagtgtggctgctggagtacctatgattacttggcctatagcttttgaggaattttataatgagaagttggtaactg |
18989655 |
T |
|
| Q |
244 |
aggtacttaaaattggtgtacctgttggagttaaaaaa |
281 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||| |
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| T |
18989656 |
aagtacttaaaattggtgtacctgttggagataaaaaa |
18989693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 19001890 - 19001937
Alignment:
| Q |
44 |
atttgagaaaagaatggaaggaaagggactaattataagaggttggtc |
91 |
Q |
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|||||||||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
19001890 |
atttgagaaaaggatgaaaggaaacggactaattataagaggttggtc |
19001937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 11686 - 11646
Alignment:
| Q |
121 |
caattggagcatttgtgactcattgtggatggaattcagtt |
161 |
Q |
| |
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||||||| |||||| ||||||||||||| |||||||||||| |
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| T |
11686 |
caattggtgcatttttgactcattgtggttggaattcagtt |
11646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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