View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_low_10 (Length: 378)
Name: NF5359_low_10
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 359
Target Start/End: Complemental strand, 4676905 - 4676558
Alignment:
| Q |
12 |
atcatcactaatttgcattcttggttgtttaggagaacaaactgtatcaaaattctaagaatcnnnnnnnnnnnnnnnnnnnnnngaagtatacaaatac |
111 |
Q |
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| T |
4676905 |
atcatcactaatttgcattcttggttgtttaggagaacaaactgtatcaaaattctaagaatcaaaaactgaaaaaagaaaaaaagaagtatacaaatac |
4676806 |
T |
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| Q |
112 |
aatagaatcatttgcatagtaatataccatcatcttcactctcagtttcagtatcaacttcatcttcactaaaatcattcaccttaggcttaatattaag |
211 |
Q |
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| T |
4676805 |
aatagaatcatttgcatagtaatataccatcatcttcactctcagtttcagtatcaacttcatcttcactaaaatcattcaccttaggcttaatattaag |
4676706 |
T |
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| Q |
212 |
ccattttttcatcacaatagaaggccaaaaagcctacaataaaattaaatcagcaacttatgatcattgaaaacaatcaactttctttaaagaatgttat |
311 |
Q |
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| T |
4676705 |
ccattttttcatcacaatagaaggccaaaaagcctacaataaaatcaaatcagcaacttatgatcattgaaaacaatcaactttctttaaagaatgttat |
4676606 |
T |
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| Q |
312 |
aaagtttacctctgatctttttcctcttcttcccttcattgtttcaca |
359 |
Q |
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| T |
4676605 |
aaagtttacctctgatctttttcctcttcttcccttcattgtttcaca |
4676558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 40779697 - 40779788
Alignment:
| Q |
135 |
ataccatcatcttcactctcagtttcagtatcaacttcatcttcactaaaatcattcaccttaggcttaatattaagccattttttcatcac |
226 |
Q |
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| T |
40779697 |
ataccatcatcttcactctcagtttcagtgtcagcttcatcttcactaaaatcataaaccttttgctttatattcagccatttcttcatcac |
40779788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 40772541 - 40772605
Alignment:
| Q |
135 |
ataccatcatcttcactctca---gtttcagtatcaacttcatcttcactaaaatcattcacctt |
196 |
Q |
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| T |
40772541 |
ataccatcatcttcactttcatcagtttcagtgttagcttcatcttcactaaaatcatacacctt |
40772605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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