View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_low_16 (Length: 264)
Name: NF5359_low_16
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 37224261 - 37224514
Alignment:
| Q |
11 |
cagagacaaggaccaagaaacagtttgaagtggaactgacattgatccacttgccattgtgaagaacttgaaggccactaactccattctggatgaggag |
110 |
Q |
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| T |
37224261 |
cagagacgaggaccaagaaacagtttgaagtggaactgacattgatccacttgccattgtgaagaacttgaaggccactaactccattctggatgaggag |
37224360 |
T |
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| Q |
111 |
gttcaagaggccatgatcggaatgtgggggcattcccattgcaagctcaggttgaggacaaggaggataaagatttgctgccaacatttgtaaaccagaa |
210 |
Q |
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| T |
37224361 |
gttcaagaggccatgatcggaatgtgggggcattcccattgcaagatcaggttgaggacaaggaggataaagatttgctgccaacatttgtaaaccagaa |
37224460 |
T |
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| Q |
211 |
tctagattcattgttttgtctatatagttgacttccaaacccaaacttcctgat |
264 |
Q |
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| T |
37224461 |
tctagattcattgttttgtctatatagttgacttccaaacccaaactttctgat |
37224514 |
T |
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