View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_low_18 (Length: 238)
Name: NF5359_low_18
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37616466 - 37616688
Alignment:
| Q |
1 |
gttatttggaataataactctcataataaagaagatggtagaatgtcatcttaggtggcgtgaatttgtactcttagaacaacaaccagtaatagaagaa |
100 |
Q |
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| T |
37616466 |
gttatttggaataataactctcataataaagaagatggtagaatgtcatcttaggtggcgtgaatttgtactcttagaacaacaaccagtaatagaagaa |
37616565 |
T |
|
| Q |
101 |
acgaaaaattctaagacaatgtgacataatctttgttcacgtagttagttcaaccattaatgatgcctaccactt-cgacaatagagtagctatagttct |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
37616566 |
acgaaaaattctaagacaatgtgacataatctttgttcacgtagttagttcaaccattaataatgcctaccacttgcgacaatagagtagctatagttct |
37616665 |
T |
|
| Q |
200 |
gtatagttctttgatgaattaag |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
37616666 |
gtatagttctttgatgaattaag |
37616688 |
T |
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