View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_low_20 (Length: 237)
Name: NF5359_low_20
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 13152344 - 13152545
Alignment:
| Q |
14 |
acatcatcacatgcatataattttcatcttatgtnnnnnnntaatgtatataattttcacatcactccctaggcagagatgaagtgtatgatcacgttag |
113 |
Q |
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| T |
13152344 |
acatcatcacatgcatataattttcatcttatgtaaaaaaataatgtatataattttcacatcactccctaggcagagatgaagtgtatgatcacgttag |
13152443 |
T |
|
| Q |
114 |
ttgatagaaaaagtactgctacatacaacaagctagacgacaatttatacacataatctgcgtgcatgggtctggattttgtgaaatcactatatacagt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13152444 |
ttgatagaaaaagtactgctacatacaacaagctagacgacaatttatacacataatctgcgtgcatgggtctggattttgtgaaatcactatatacagt |
13152543 |
T |
|
| Q |
214 |
tc |
215 |
Q |
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| T |
13152544 |
tc |
13152545 |
T |
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