View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_low_21 (Length: 222)
Name: NF5359_low_21
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 32542114 - 32542297
Alignment:
| Q |
9 |
gacatcatcaaacatgtcaaatcatcaactgtacatacacactttcaaaagtggaaccaaacattaaacaactctgaacgaagaatcaactttacaaaat |
108 |
Q |
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| T |
32542114 |
gacaacatcaaacatgtcaaatcatcaactgtacatacacactttcaaaagtggaaccaaacattaaacaactctgaacgaagaatc------------- |
32542200 |
T |
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| Q |
109 |
caattttcactacgaataatcaaatcaaagagagaatcactttaacaagtgaattatggttagttagttaccaagaatgagcatggcatcaggaagag |
206 |
Q |
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| T |
32542201 |
-aattttcactacgaataatgaaatcaaagagagaatcactttaacaagtgaattatggttagttagttaccaagaatgagcatggcatcaggaagag |
32542297 |
T |
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