View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_low_22 (Length: 216)
Name: NF5359_low_22
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_low_22 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 39082474 - 39082658
Alignment:
| Q |
19 |
tcataatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccccactt |
118 |
Q |
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| T |
39082474 |
tcataatcatcccttattttctcatcagaacgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccccactt |
39082573 |
T |
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| Q |
119 |
tcattgttaccccaccaaagatcgctgcatttccaaaataaccctcgtcaagtggaggaatcatccttggtctaacacctatgct |
203 |
Q |
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| T |
39082574 |
tcattgttaccccaccaaagatcgctgcatttccaaaataaccctcgtcaagtggaggaatcatccttggtctaacacctatgct |
39082658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 39088128 - 39088309
Alignment:
| Q |
19 |
tcataatcatcccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccccactt |
118 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||||| ||| |
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| T |
39088128 |
tcataatcatcccttattttctcatcagaacgtaacataatcatcttgttcatctccaatgaacattttcctatcccacattccagaatctcccctgctt |
39088227 |
T |
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| Q |
119 |
tcattgttaccccaccaaagatcgctgcatttccaaaataaccctcgtcaagtggaggaatcatccttggtctaacacctat |
200 |
Q |
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| T |
39088228 |
tcattgttacactaccaatgatccctgcatttccaaaataatcctcgtcaagtggaggagtcatccttggtctaacacctat |
39088309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 39091527 - 39091700
Alignment:
| Q |
27 |
atcccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccccactttcattgtt |
126 |
Q |
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| T |
39091527 |
atcccttattttctcatcagaatgtgacataatcatcttgtttaactccaaagcaacttttccaatcccacattccagaatctcccctgctttcattgtt |
39091626 |
T |
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| Q |
127 |
accccaccaaagatcgctgcatttccaaaataaccctcgtcaagtggaggaatcatccttggtctaacacctat |
200 |
Q |
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| T |
39091627 |
acaccaccaatcattgaagcatttccaaaataatcctcctcaagcggaggaatcatccttggtctaacacctat |
39091700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 39071081 - 39071173
Alignment:
| Q |
30 |
ccttattttctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaatcccacattccagaatctcccccactttcat |
122 |
Q |
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| T |
39071081 |
ccttattttctcatcagaatgtaacaaaatcatcttgtttatctccaaagcaacttttccgatttcacactctagaacctccccgactttcat |
39071173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 4589 - 4630
Alignment:
| Q |
38 |
tctcatcagaatgcaacataatcatcttgttcatctccaaag |
79 |
Q |
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| T |
4589 |
tctcatcagagtgcaaaacaatcatcttgttcatctccaaag |
4630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 15744933 - 15744880
Alignment:
| Q |
38 |
tctcatcagaatgcaacataatcatcttgttcatctccaaagcaacttttccaa |
91 |
Q |
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| T |
15744933 |
tctcatcagattgcaaagcaatcatcttgttcatctccaaagcacctttaccaa |
15744880 |
T |
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