View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_low_24 (Length: 201)
Name: NF5359_low_24
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 5e-64; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 7727701 - 7727530
Alignment:
| Q |
19 |
atacttatcacccaaacttgagtactctctcaacccaaactcaaaccacctcttcataagnnnnnnnnctccaaaattaagatgaagactcctccaaaca |
118 |
Q |
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| T |
7727701 |
atacttatcacccaaacttgagtactctctcaacccaaactcaaaccacctcttcataagaaaaaaa-ctccaaaattaagatgaagactcctccaaaca |
7727603 |
T |
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| Q |
119 |
tgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgctgatgatgt |
191 |
Q |
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| T |
7727602 |
agtttctcctactccacttaacacttctcttcctttcttccatctacttctccacatcaaatgctgatgatgt |
7727530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 7699766 - 7699671
Alignment:
| Q |
87 |
ctccaaaattaagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgc |
182 |
Q |
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| T |
7699766 |
ctccaaaattaagatgaagacttctccaaacatgtttctcctactccacttaacacttctcttcctttcttccatctacttctccaaatcaaacgc |
7699671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 7731791 - 7731690
Alignment:
| Q |
90 |
caaaattaagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgctgatgat |
189 |
Q |
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| T |
7731791 |
caaaattaagatgaagactactccaaacatgtttctcctactccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgatgat |
7731692 |
T |
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| Q |
190 |
gt |
191 |
Q |
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|| |
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| T |
7731691 |
gt |
7731690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 7739952 - 7739848
Alignment:
| Q |
87 |
ctccaaaattaagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgctgat |
186 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| || |||||| |
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| T |
7739952 |
ctccaaaattaagatgaagactactccaaacaagtttctcctactccacttgacactcctcttcctttcttccatctacttctccacatcaaatgctgat |
7739853 |
T |
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| Q |
187 |
gatgt |
191 |
Q |
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||||| |
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| T |
7739852 |
gatgt |
7739848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 7714102 - 7714016
Alignment:
| Q |
96 |
taagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgc |
182 |
Q |
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| T |
7714102 |
taagatgaagactcctccaaacatgtttatgctactcagcctaacactcttcttcctttcttccatctacttctccaaatcaaacgc |
7714016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 7731873 - 7731814
Alignment:
| Q |
18 |
aatacttatcacccaaacttgagtactctctcaacccaaa-ctcaaaccacctcttcata |
76 |
Q |
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|||||| |||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
7731873 |
aatactaatcacccaaacttgagtactctcttaacacaaagctcaaaccacctcttcata |
7731814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 12907694 - 12907786
Alignment:
| Q |
91 |
aaaattaagatgaagactcctccaaacatgtttctccttctccatttaacacttctcttcctttcttccatctacttctccacatccaacgct |
183 |
Q |
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|||||||||||||||||| |||| ||||||||||| || ||||| |||||||| ||||||| |||| ||| |||||||| | ||| |||||| |
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| T |
12907694 |
aaaattaagatgaagacttctcctaacatgtttcttctactccagttaacactcatcttcctctctttcatatacttctctaaatcaaacgct |
12907786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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