View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5359_low_6 (Length: 434)
Name: NF5359_low_6
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 54787012 - 54786589
Alignment:
| Q |
1 |
gagaggcattgtcaggtgggagtggttcaacgttaatatcaaccttcattccatggaagcaaaagcctctaccacatagaaagtaatatgtctttgcctc |
100 |
Q |
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| T |
54787012 |
gagaggcattgtcaggtgggagtggttcaacgttaatatcaaccttcattccatggaagcaaaagcctctaccacatagaaagtaatatgtctttgcctc |
54786913 |
T |
|
| Q |
101 |
taatagttggaaaacatctcttcctcctctcgtgatgttgcttatgaagcccttatcaacacatttctcataatttgttttgttcacctcaagaacatta |
200 |
Q |
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| T |
54786912 |
taagagttggaaaacatctcttcctcctctcgtgatgttgcttatgaagcccttatcaacacatttctcataatttgttttgttcacctcaagaacatta |
54786813 |
T |
|
| Q |
201 |
tagatgtgcttatcaaaaccaaaatctatttacaaaaaagagaattcacttcagttaataataaataaattatttgcaatgatattaatcaacatgtgtc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54786812 |
tagatgtgcttatcaaaaccaaaatctatttacaaaaaagagaattcacttcagttaataataaataaa-tatttgcaatgatattaatcaacatgtgtc |
54786714 |
T |
|
| Q |
301 |
aggaaggaacgaacttacatagccaatcaccctgataaaagtgctcattacttgcccaatttgtgaagttaatttttggatcccaagtataccttccacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54786713 |
aggaaggaacgaacttacatagccaatcaccctggtaaaagtgctcattacttgcccaatttgtgaagttaatttttggatcccaagtataccttccacc |
54786614 |
T |
|
| Q |
401 |
tccaaccctgtgcaacacaggttct |
425 |
Q |
| |
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| T |
54786613 |
tccaaccctgtgcaacacaggttct |
54786589 |
T |
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